New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	3740267 =	45 (0.800)	3 (0.060)	3/96	NT	5.6%	coding (196/1338 nt)	yieG	predicted inner membrane protein
	?	AP009048	3740297 =	58 (1.100)					coding (226/1338 nt)	yieG	predicted inner membrane protein

CCAGTGCAACTGGCAGGTTAGCAAACAGTCCCATCATAATACTGCCGAATGCAGCGATCAGACAGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3740336‑3740267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGGCACCCGCTATGGGCCTGAATGCGTTCTTCG  >  AP009048/3740297‑3740366                                                                                                                                              CCAGTGCAACTGGCAGGTTAGCAAACAGTCCCATCATAATACTGCCGAATGCAGCGATCAGACAGGTAGT                                                                        >  1:4615754/1‑70                        AACAGTCCCATCATAATACTGCCGAATGCAGCGATCAGACAGGTA                                                                          >  1:4080771/1‑45                           AGTCCCATCATAATACTGCCGAATGCAGCGATCAGACAGGTA                                                                          >  1:3673079/1‑42                                 ATCATAATACTGCCGAATGCAGCGATCAGACAGGTAGT                                                                        <  1:4300958/38‑1                                          CTGCCGAATGCAGCGATCAGACAGGTAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTGCAACTGGCA                              <  1:3197515/71‑1                                           TGCCGAATGCAGCGATCAGACAGGTAGTATTATGATGGGACTGTTTGCTAAC                                                >  1:505604/1‑52                                                    CAGCGATCAGACAGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGGCACCCGCTATG                     <  1:783931/70‑1                                                                    AGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGGCACCCGCTATGGGCCTGAATGCGTTCTT    >  1:5098965/1‑71                                                                      TATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGGCACCCGCTATGGGCCTGAATGCGTTCTTCG  <  1:763322/71‑1                                                                                                                                              CCAGTGCAACTGGCAGGTTAGCAAACAGTCCCATCATAATACTGCCGAATGCAGCGATCAGACAGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3740336‑3740267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGGCACCCGCTATGGGCCTGAATGCGTTCTTCG  >  AP009048/3740297‑3740366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.