| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3740267 = | 45 (0.800) | 3 (0.060) | 3/96 | NT | 5.6% | coding (196/1338 nt) | yieG | predicted inner membrane protein |
| ? | AP009048 | 3740297 = | 58 (1.100) | coding (226/1338 nt) | yieG | predicted inner membrane protein | |||||
GGTTTACATCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGG > AP009048/3740197‑3740336 | ggTTTACATCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCa > 1:4169321/1‑71 (MQ=255)cgaagaacgcattcaggcccatagcgggtgccagtgcaactggcaggttagcaaacagtcccatcataata < 1:763322‑M1/1‑1 (MQ=255) aagaacgcattcaggcccatagcgggtgccagtgcaactggcaggttagcaaacagtcccatcataatact > 1:5098965‑M1/69‑71 (MQ=255) tACATCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTAc > 1:1405398/1‑71 (MQ=255) aCATCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTAc < 1:1312214/70‑1 (MQ=255) tCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTAc < 1:313535/67‑1 (MQ=255) tCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTAc < 1:3823967/67‑1 (MQ=255) gTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTc < 1:5009818/70‑1 (MQ=255) tttGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGa > 1:5185121/1‑70 (MQ=255) tttGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGa > 1:4918883/1‑70 (MQ=255) tttGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGAt > 1:4509121/1‑71 (MQ=255) tttGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGAt > 1:324669/1‑71 (MQ=255) catagcgggtgccagtgcaactggcaggttagcaaacagtcccatcataatACTGCCTGTCTGATCGCTg < 1:783931‑M1/19‑1 (MQ=255) aCCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCa > 1:57476/1‑71 (MQ=255) aCCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCa < 1:1989110/71‑1 (MQ=255) cccGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCAt > 1:4359062/1‑71 (MQ=255) ccGCAAATGCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTAc > 1:3444762/1‑53 (MQ=255) cGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTc < 1:3128869/71‑1 (MQ=255) gCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCg < 1:2959006/71‑1 (MQ=255) aaaTTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGc < 1:3445549/71‑1 (MQ=255) aaTTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTc > 1:1503024/1‑53 (MQ=255) tgccagttgcactggcaggttagcaaacagtcccatcataatACTACCTGTCTGATCGCTGCATTCGGCAg < 1:3197515‑M1/29‑1 (MQ=255) ttCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCa > 1:2773796/1‑69 (MQ=255) ttCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAg > 1:4112681/1‑70 (MQ=255) tCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCa > 1:4213226/1‑61 (MQ=255) cTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtat > 1:3681458/1‑71 (MQ=255) gCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTatg < 1:468998/71‑1 (MQ=255) cGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTatga < 1:88684/71‑1 (MQ=255) gTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtattat < 1:247650/68‑1 (MQ=255) ttGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATTGCTGCATTCGGc < 1:3877447/59‑1 (MQ=255) tGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCAtt < 1:4745032/54‑1 (MQ=255) cTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGta < 1:4636019/60‑1 (MQ=255) cTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGa < 1:3699766/71‑1 (MQ=255) gCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGAc > 1:3117094/1‑69 (MQ=255) gCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACt < 1:2683451/70‑1 (MQ=255) gttagcaaacagtcccatcataatACTACCTGTCTGATCGCTGCATTCGGCa > 1:505604‑M1/25‑52 (MQ=255) aTGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtatta < 1:968174/58‑1 (MQ=255) tGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCa < 1:3578669/44‑1 (MQ=255) ggATACCAGCGCCGTCTTCGTCACTACCTGTCTGa > 1:3044850/1‑35 (MQ=255) ggATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTg > 1:2678669/1‑71 (MQ=255) gATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTg < 1:4656402/70‑1 (MQ=255) gATACCAGCGCCGTCTTCGTCACTACCTGTCCGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGc < 1:4380553/71‑1 (MQ=255) tACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTa < 1:4797217/71‑1 (MQ=255) tACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTa < 1:2925552/71‑1 (MQ=255) aCCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGa > 1:3129368/1‑60 (MQ=255) ccAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAAc < 1:3337942/71‑1 (MQ=255) ccGTCTTCGTCACTACCTGTCTGATCGCTGCATTCg > 1:2417512/1‑36 (MQ=255) gTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGt < 1:4751985/71‑1 (MQ=255) gTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGt < 1:2093528/71‑1 (MQ=255) gTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGt < 1:1109568/71‑1 (MQ=255) tCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtatta < 1:1302045/42‑1 (MQ=255) tCTTCGTCACTACCTGTCTGATCCCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAg < 1:1162308/69‑1 (MQ=255) cTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTg > 1:1748448/1‑71 (MQ=255) ttCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTatg > 1:2038301/1‑42 (MQ=255) ttCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTatg > 1:3047792/1‑42 (MQ=255) ttCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGAGACTGTTTGCTAACCTGCCAGTTg > 1:1821169/1‑70 (MQ=255) tCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtattat < 1:1632624/40‑1 (MQ=255) tCGTCACTACCTGTCTGATCGCTGCATTCGGCAGtattat < 1:3514969/40‑1 (MQ=255) cGTCACTACCTGTCTGATCGCTGCATTGGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCa < 1:4054913/70‑1 (MQ=255) cGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGc < 1:3112223/62‑1 (MQ=255) cGTCACTACCTGTCTGATAGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAAc > 1:2759274/1‑58 (MQ=255) gTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAAc > 1:3432423/1‑57 (MQ=255) gTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCAc < 1:1457467/70‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTCGGCAGTATTatga < 1:1033827/39‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGc < 1:700306/60‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGc < 1:870349/60‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCa < 1:3765356/68‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCAc < 1:4488545/69‑1 (MQ=255) tCACTACCTGTCTGATCGCTGCATTAGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCAc < 1:1129764/69‑1 (MQ=255) ACTACCTGTCTGATCGCTGCATTCGGCAGTATTatgat < 1:4300958‑M1/38‑1 (MQ=255) ACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTgg > 1:4615754‑M1/1‑70 (MQ=255) | GGTTTACATCGTTTTTGTTAACCCGCAAATTCTTGGCGTTGCTGGCATGGATACCAGCGCCGTCTTCGTCACTACCTGTCTGATCGCTGCATTCGGCAGTATTATGATGGGACTGTTTGCTAACCTGCCAGTTGCACTGG > AP009048/3740197‑3740336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |