| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3842122 = | 73 (1.300) | 6 (0.120) | 3/88 | NT | 10.0% | coding (1020/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | AP009048 | 3842147 = | 45 (0.930) | coding (1045/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
GTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3842197‑3842122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcagtaAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA > AP009048/3842147‑3842215 GTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTT < 1:55118/71‑1GTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTT < 1:393420/71‑1GTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTT > 1:2817993/1‑71 TTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTT > 1:1980701/1‑68 TAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAG > 1:3565449/1‑71 AAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTC > 1:4089797/1‑56 AACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCA > 1:769103/1‑55 CTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTT < 1:1880387/47‑1 TTACTGAATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTT > 1:4422930/1‑70 TGAATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTAAAACTCACTTCTTA > 1:2069710/1‑70 AATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTT < 1:1277841/64‑1 AATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAA < 1:493019/57‑1 AATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAA < 1:3882579/57‑1 AATTAGTTAAAGTTTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAA < 1:1384834/57‑1 TTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTA > 1:2973346/1‑65 TTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGT < 1:1785469/35‑1 TCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTT < 1:45494/59‑1 TCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTG > 1:1025553/1‑35 CAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAAT > 1:2198298/1‑71 AGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATT < 1:2483315/71‑1 AGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTT > 1:5147911/1‑57 GTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTA < 1:1586810/71‑1 GTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTA < 1:4234681/39‑1 TAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA < 1:1070269/71‑1 TAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTA < 1:1222026/50‑1 AAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAAC > 1:2802905/1‑39 GTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3842197‑3842122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcagtaAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA > AP009048/3842147‑3842215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |