| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3842122 = | 73 (1.300) | 6 (0.120) | 3/88 | NT | 10.0% | coding (1020/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | AP009048 | 3842147 = | 45 (0.930) | coding (1045/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
AATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTT > AP009048/3842053‑3842190 | ttaattaagaataaacaagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTa < 1:1070269‑M1/2‑1 (MQ=255) taattaagaataaacaagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTAc < 1:1586810‑M1/3‑1 (MQ=255) aTTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATAc > 1:1223248/1‑71 (MQ=255) aattaagaataaacaagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTACt < 1:2483315‑M1/4‑1 (MQ=255) attaagaataaacaagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTACTg > 1:2198298‑M1/67‑71 (MQ=255) tGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACt > 1:1096092/1‑69 (MQ=255) tGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTg > 1:1071578/1‑70 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATa > 1:5109709/1‑62 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:4006590/1‑71 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:1507647/1‑71 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:1013107/1‑71 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:447317/1‑71 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:2047896/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:2221438/1‑70 (MQ=255) taaacaagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTACTGaa > 1:2973346‑M1/59‑65 (MQ=255) cGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt > 1:2096575/1‑70 (MQ=255) cGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt > 1:581754/1‑70 (MQ=255) gAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTaa > 1:108146/1‑71 (MQ=255) atcatcATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACt < 1:4235875/71‑1 (MQ=255) atcatcATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACt < 1:401173/71‑1 (MQ=255) tcatcaTAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACt > 1:226657/1‑70 (MQ=255) catcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTa > 1:4353621/1‑70 (MQ=255) aagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTACt > 1:5147911‑M1/54‑57 (MQ=255) aagtttaagaagtgagttaaaactcacttcttatctatacaacttaatctcttTACTGa < 1:45494‑M1/6‑1 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGTAACTTTAACTaa < 1:4337444/70‑1 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt < 1:350502/71‑1 (MQ=255) catAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt > 1:1201846/1‑70 (MQ=255) catAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt > 1:2175647/1‑70 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAAc > 1:4780890/1‑58 (MQ=255) taagaagtgagttttaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAATTCa > 1:2069710‑M1/49‑70 (MQ=255) taagaagtgagttaaaactcacttcttatctatacaacttaatctcttTa < 1:1222026‑M1/2‑1 (MQ=255) tAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAg > 1:5160888/1‑71 (MQ=255) aaaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAg > 1:4741349/1‑70 (MQ=255) aaaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAg > 1:4780561/1‑70 (MQ=255) aTCTATACAAATAGTATCCCAAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1860759/57‑1 (MQ=255) tCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa > 1:2030039/1‑69 (MQ=255) aagtgagttaaaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAAtt < 1:1277841‑M1/20‑1 (MQ=255) aagtgagttaaaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAATTCAGTaa > 1:4422930‑M1/45‑70 (MQ=255) cTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAg > 1:5187529/1‑66 (MQ=255) tataCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:877938/1‑69 (MQ=255) taCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa < 1:3943057/67‑1 (MQ=255) taCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa < 1:3355329/67‑1 (MQ=255) gttaaaactcacttcttatctatacaacttaatctcttt > 1:2802905‑M1/39‑39 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAt > 1:3755740/1‑70 (MQ=255) ttaaaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAAtt < 1:493019‑M1/20‑1 (MQ=255) ttaaaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAAtt < 1:1384834‑M1/20‑1 (MQ=255) ttaaaactcacttcttatctatacaacttaatctcttTACTGAAACTTTAACTAAtt < 1:3882579‑M1/20‑1 (MQ=255) aaaTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaa < 1:2728772/44‑1 (MQ=255) aaaTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAag < 1:575371/65‑1 (MQ=255) aaaTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTa < 1:3676300/71‑1 (MQ=255) taaaactcacttcttatctatacaacttaatctcttTAc < 1:4234681‑M1/3‑1 (MQ=255) aaTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1234697/48‑1 (MQ=255) aTAGTATCCCCAACATATGCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:4957880/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAag < 1:3871786/63‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTaa > 1:1966554/1‑70 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:4822459/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:1424575/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:1556274/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg > 1:3420075/1‑71 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:237177/71‑1 (MQ=255) tAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGt > 1:362737/1‑71 (MQ=255) gTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGtt < 1:3779238/70‑1 (MQ=255) tCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTa < 1:4781778/42‑1 (MQ=255) tCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa < 1:4676567/54‑1 (MQ=255) tCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta < 1:4191101/70‑1 (MQ=255) tCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta < 1:2222956/70‑1 (MQ=255) cacttcttatctatacaacttaatctcttTACTGa > 1:1025553‑M1/30‑35 (MQ=255) ccccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:4964088/1‑69 (MQ=255) acttcttatctatacaacttaatctcttTACTGaa < 1:1785469‑M1/7‑1 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAt > 1:3615779/1‑59 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:1867561/1‑68 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAg < 1:651877/71‑1 (MQ=255) ccAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:4172298/38‑1 (MQ=255) cAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGAt < 1:4824767/71‑1 (MQ=255) cATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaag < 1:1740644/71‑1 (MQ=255) atatACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCTGTAAAGAGATTat < 1:2131693/56‑2 (MQ=255) atatACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:3229916/1‑48 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGtat < 1:3574561/62‑1 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaagaa < 1:4847723/71‑1 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaagaa < 1:1519618/71‑1 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaag > 1:1382125/1‑69 (MQ=255) taCGGTAAAACATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGt > 1:2167745/1‑71 (MQ=255) aCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa < 1:4775274/44‑1 (MQ=255) cGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGa < 1:3920834/71‑1 (MQ=255) ggTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAg > 1:178812/1‑71 (MQ=255) gTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGt < 1:3383919/71‑1 (MQ=255) tAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtt > 1:717605/1‑71 (MQ=255) tAAAAGATATCGATACTGAAACTCTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtt > 1:1254025/1‑71 (MQ=255) aaaGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtttt < 1:4088482/71‑1 (MQ=255) aaaGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtttt < 1:1082213/71‑1 (MQ=255) aaaGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGttt > 1:4370380/1‑70 (MQ=255) aaaGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGttt < 1:3197665/70‑1 (MQ=255) aGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTaa < 1:892271/71‑1 (MQ=255) aGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTaa > 1:3385047/1‑71 (MQ=255) atatCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACt < 1:1661815/71‑1 (MQ=255) gATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCActt > 1:5138304/1‑71 (MQ=255) gATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCActt > 1:2767193/1‑71 (MQ=255) | AATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTT > AP009048/3842053‑3842190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |