New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	3847603 =	60 (1.070)	4 (0.080)	3/96	NT	6.5%	intergenic (+14/‑261)	htrL/kbl	hypothetical protein/glycine C‑acetyltransferase
	?	AP009048	3847628 =	58 (1.100)					intergenic (+39/‑236)	htrL/kbl	hypothetical protein/glycine C‑acetyltransferase

TTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3847675‑3847603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCAT  >  AP009048/3847628‑3847696                                                                                                                                                TTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCA                                                                         >  1:2581498/1‑71   GATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCAC                                                                        >  1:1297543/1‑70    ATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACT                                                                       <  1:3457835/70‑1    ATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCAC                                                                        >  1:4261777/1‑69                                                 AGTTGGTATCAAAACGCTACCCACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATAT                          >  1:4651384/1‑70                                                  GTTGGTATCAAAACGCTACCCACTGAGATAGGAAAAAT                                                         <  1:929170/38‑1                                                           AAAACGCTACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAT                                         <  1:158063/45‑1                                                           AAAACGCTACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAT                                         <  1:413811/45‑1                                                                        CTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCAT  >  1:4210050/1‑71                                                                        CTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCAT  >  1:4268904/1‑71                                                                                                                                                TTGATATAAAAAGAAAAAATGATGCCAAAGCATCATTTTTCCTATCTCAGTTGGTATCAAAACGCTACCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3847675‑3847603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCAT  >  AP009048/3847628‑3847696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.