| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3847603 = | 60 (1.070) | 4 (0.080) | 3/96 | NT | 6.5% | intergenic (+14/‑261) | htrL/kbl | hypothetical protein/glycine C‑acetyltransferase |
| ? | AP009048 | 3847628 = | 58 (1.100) | intergenic (+39/‑236) | htrL/kbl | hypothetical protein/glycine C‑acetyltransferase | |||||
AGTAACACTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATAT > AP009048/3847533‑3847672 | aGTAACACTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTa < 1:2503975/71‑1 (MQ=255) atgatgattgattttactgcattgatataaaaagaaaaaatgatgccaaagcatcatttttcctatctcAg > 1:4268904‑M1/70‑71 (MQ=255) atgatgattgattttactgcattgatataaaaagaaaaaatgatgccaaagcatcatttttcctatctcAg > 1:4210050‑M1/70‑71 (MQ=255) acacTTTATGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTgg > 1:1615014/1‑71 (MQ=255) acacTTTAGGGGCAAAAATGCAGGCGCTGATAATTTTCCTTTCAAGAAAATAGGTTTCACTCCATTAGTgg > 1:401251/1‑71 (MQ=255) acacTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAg > 1:628884/1‑68 (MQ=255) acacTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTgg > 1:3792621/1‑71 (MQ=255) acacTTTAGGGGAAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTgg > 1:1731427/1‑71 (MQ=255) cacTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTggg > 1:279148/1‑71 (MQ=255) ttAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGc > 1:4047598/1‑71 (MQ=255) tAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCg > 1:1387441/1‑71 (MQ=255) tAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCg > 1:1643879/1‑71 (MQ=255) tAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCg > 1:2584288/1‑71 (MQ=255) ggggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGt < 1:2517194/70‑1 (MQ=255) ggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGtttt < 1:2877798/71‑1 (MQ=255) ggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGtttt < 1:4203951/71‑1 (MQ=255) gCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGtttt > 1:4440131/1‑70 (MQ=255) aaaaaTGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGAt < 1:5087369/71‑1 (MQ=255) aaaaTGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGa < 1:2279500/69‑1 (MQ=255) aaaTGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGAt > 1:4875203/1‑69 (MQ=255) tGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCaa > 1:2713132/1‑71 (MQ=255) atataaaaagaaaaaatgatgccaaagcatcatttttcctatctcAGTGGGTAGCGTTTTGATACCAACt > 1:4651384‑M1/46‑70 (MQ=255) gcTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTa > 1:4461546/1‑49 (MQ=255) agaATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAg > 1:3962681/1‑46 (MQ=255) agaATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAgg > 1:2644673/1‑70 (MQ=255) gaATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGaa < 1:3291946/71‑1 (MQ=255) aaTTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGttt > 1:4465126/1‑49 (MQ=255) aaTTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGt < 1:168528/47‑1 (MQ=255) aTTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGaaaa < 1:803382/71‑1 (MQ=255) ttttCCTTTCAAGAAAATAGGTTTCCCTCCATTAGt < 1:2284714/36‑1 (MQ=255) ttCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGa > 1:4809614/1‑48 (MQ=255) ttCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAat > 1:3799544/1‑70 (MQ=255) ttCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAat > 1:3957934/1‑70 (MQ=255) atgatgccaaagcatcatttttcctatctcAGTTGGTAGCGtttt < 1:158063‑M1/15‑1 (MQ=255) atgatgccaaagcatcatttttcctatctcAGTTGGTAGCGtttt < 1:413811‑M1/15‑1 (MQ=255) ccTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAatgat > 1:4863929/1‑71 (MQ=255) cTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGtttt < 1:269943/43‑1 (MQ=255) cTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTgaga < 1:1036238/57‑1 (MQ=255) cTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAg > 1:702689/1‑60 (MQ=255) tttCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTga < 1:4734245/54‑1 (MQ=255) ttCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCg > 1:4192351/1‑37 (MQ=255) ttCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCg > 1:1954568/1‑37 (MQ=255) ttCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCt > 1:1764809/1‑71 (MQ=255) tCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGa > 1:1121168/1‑42 (MQ=255) tCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAatga > 1:1190479/1‑66 (MQ=255) cAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCttt > 1:367568/1‑71 (MQ=255) aaggAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCttt > 1:4023501/4‑71 (MQ=255) aaGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTgaga < 1:3248198/52‑1 (MQ=255) aaGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTgaga < 1:4549154/52‑1 (MQ=255) aaGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTg < 1:2390443/71‑1 (MQ=255) aGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTg < 1:2066106/70‑1 (MQ=255) gAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGa > 1:4138924/1‑38 (MQ=255) gAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGa > 1:3779865/1‑38 (MQ=255) gAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTgg > 1:1924692/1‑70 (MQ=255) gAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTgg > 1:1005615/1‑70 (MQ=255) aaaTAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGca < 1:4960105/70‑1 (MQ=255) aaTAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAat > 1:232422/1‑57 (MQ=255) aTAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGcatc < 1:1101813/70‑1 (MQ=255) tAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGcatcat > 1:564582/1‑71 (MQ=255) tAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGcatcat > 1:3716818/1‑71 (MQ=255) aGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtt > 1:4902056/1‑71 (MQ=255) ggTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtt < 1:3609428/70‑1 (MQ=255) atttttcctatctcAGTGGGTAGCGTTTTGATACCAAc < 1:929170‑M1/24‑1 (MQ=255) gTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtttt < 1:3840058/71‑1 (MQ=255) gTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtt < 1:457990/69‑1 (MQ=255) tttCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAttttt < 1:3064174/71‑1 (MQ=255) ttCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCtt < 1:3947810/57‑1 (MQ=255) tCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTc > 1:1423586/1‑71 (MQ=255) cccTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtttttt < 1:4055872/69‑1 (MQ=255) ccTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAat < 1:4678111/47‑1 (MQ=255) ccTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTg > 1:5186729/1‑56 (MQ=255) cTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCAtttt < 1:2400619/65‑1 (MQ=255) tctaTTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCtttt > 1:163747/4‑71 (MQ=255) tCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATa > 1:919000/1‑37 (MQ=255) ccATTAGTGGGTAGCGTTTTGATACCAACTGAGATAg > 1:70716/1‑37 (MQ=255) ccATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAatga > 1:1953947/1‑46 (MQ=255) ccATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCtttt > 1:2023859/1‑70 (MQ=255) ccATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCtttt > 1:4584455/1‑70 (MQ=255) cATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCt < 1:1466425/49‑1 (MQ=255) cATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCttttt < 1:1721481/70‑1 (MQ=255) ttAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTtata > 1:3425135/1‑71 (MQ=255) AGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTatat < 1:3457835‑M1/70‑1 (MQ=255) | AGTAACACTTTAGGGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTGGGTAGCGTTTTGATACCAACTGAGATAGGAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATAT > AP009048/3847533‑3847672 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |