| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4561104 | 69 (1.230) | 6 (0.120) | 4/92 | NT | 8.4% | intergenic (‑104/‑569) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| ? | AP009048 | = 4561115 | 69 (1.360) | intergenic (‑115/‑558) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein | |||||
TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4561031‑4561104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtagAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACTACAGAAAAATT < AP009048/4561115‑4561049 TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG > 1:356572/1‑71TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:54805/71‑1TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:2795306/71‑1TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:2128126/71‑1 TTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGT < 1:4827103/70‑1 TAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTT > 1:4171717/1‑66 AAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTA < 1:3248298/65‑1 TAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGAGTTGATAT < 1:4964177/71‑1 TAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGAGTTGATAT < 1:4969873/71‑1 TAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:2668448/59‑1 GATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGAGTTGATATCA > 1:1132701/1‑71 TAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:2563505/40‑1 TAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:3397995/40‑1 TAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:3904571/40‑1 TAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTG < 1:5140875/40‑1 AAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTA > 1:3037278/1‑40 AGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGAGTTGATATCACTACA < 1:1006157/54‑1 GAGAAGTAAACAAATGAGATGCATGTTTCTGTTGTAGAGTTGATATCACTACA < 1:3566860/53‑1 TAAACAAATGACATGCATGTTTCTGTTGTAGAGTTGATATCACTACAA > 1:4858833/1‑48 TGTAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACTACAGAAAAAT < 1:2439107/71‑1 TGTAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACTACAGAAAA < 1:1267031/69‑1 TGTAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACT > 1:4063150/1‑61 TGTAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTAC > 1:2372373/1‑60 TGTAGAGTTGATATCACTACAACAGAAACATGCATGT < 1:1789174/37‑1 TAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACTACAGAAAAATT < 1:3569069/70‑1 TAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACT > 1:4735389/1‑47 TAGAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACT > 1:3840344/1‑47 TGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4561031‑4561104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtagAGTTGATATCACTACAACAGAAACATGCATGTCATTTGTTTACTTCTCTTTTTACTACAGAAAAATT < AP009048/4561115‑4561049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |