| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4561104 | 69 (1.230) | 6 (0.120) | 4/92 | NT | 8.4% | intergenic (‑104/‑569) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| ? | AP009048 | = 4561115 | 69 (1.360) | intergenic (‑115/‑558) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein | |||||
AATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAATTATTT > AP009048/4561049‑4561182 | aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTcta < 1:3569069‑M2/70‑4 (MQ=255) aTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTctaca < 1:2439107‑M2/71‑6 (MQ=255) tttttCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTacac > 1:664645/1‑71 (MQ=255) ttttCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTctaca < 1:1267031‑M2/69‑6 (MQ=255) tttCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAAct > 1:318362/1‑63 (MQ=255) ttCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACgg < 1:925142/70‑1 (MQ=255) gtagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGata > 1:4387422/1‑71 (MQ=255) tagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGatat > 1:3700834/1‑71 (MQ=255) tagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGatat > 1:4030515/1‑71 (MQ=255) tagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGatat > 1:4908227/1‑71 (MQ=255) tagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGatat > 1:160667/1‑71 (MQ=255) tagtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGat < 1:1567657/69‑1 (MQ=255) agtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTctaca > 1:4063150‑M2/1‑56 (MQ=255) gtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTctaca > 1:2372373‑M2/1‑55 (MQ=255) gtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACgg > 1:1661047/1‑63 (MQ=255) gtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTa < 1:2810784/71‑1 (MQ=255) gtaAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTa < 1:1137183/71‑1 (MQ=255) aaaaaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGata > 1:621080/1‑66 (MQ=255) aaaaaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTa > 1:3745534/1‑69 (MQ=255) aaaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAgg < 1:4792159/71‑1 (MQ=255) aaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAggg > 1:4902038/1‑71 (MQ=255) aaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAggg < 1:85584/71‑1 (MQ=255) aaGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAggg < 1:2244318/71‑1 (MQ=255) agagAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAgg > 1:379917/1‑69 (MQ=255) agagAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGt < 1:2201749/71‑1 (MQ=255) agaAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAg > 1:1264958/1‑71 (MQ=255) gaAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACg < 1:454228/53‑1 (MQ=255) aaGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTaaa < 1:529733/63‑1 (MQ=255) aaGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGa < 1:455867/71‑1 (MQ=255) aGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTcta > 1:3840344‑M2/1‑44 (MQ=255) aGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTcta > 1:4735389‑M2/1‑44 (MQ=255) gTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGaaa < 1:1890052/71‑1 (MQ=255) gTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGaaa < 1:4235329/71‑1 (MQ=255) tAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACgg < 1:2196606/50‑1 (MQ=255) aaCAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACg > 1:4992902/1‑47 (MQ=255) aCAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTacac < 1:521245/45‑1 (MQ=255) cAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGaaa > 1:1048269/1‑66 (MQ=255) cAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGaaa > 1:2062480/1‑66 (MQ=255) aaaTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGata > 1:1575357/1‑50 (MQ=255) aaaTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACActct < 1:1534424/71‑1 (MQ=255) aaaTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACActct < 1:1273828/71‑1 (MQ=255) aaTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTa < 1:5131825/71‑1 (MQ=255) aTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTaa < 1:4160630/71‑1 (MQ=255) aTGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTa > 1:4902598/1‑70 (MQ=255) gACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAgg < 1:2311154/53‑1 (MQ=255) gACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAgg < 1:822499/53‑1 (MQ=255) aCATGCATGTTTCTGTTGTAGTGATATCAACTctaca < 1:1789174‑M2/37‑6 (MQ=255) aCATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGt > 1:2070406/1‑54 (MQ=255) aCATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAg < 1:1498416/70‑1 (MQ=255) catgcatgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTa < 1:2275428/71‑1 (MQ=255) gcatgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGt > 1:671078/1‑67 (MQ=255) catgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCa < 1:4671344/70‑1 (MQ=255) catgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCa < 1:4496100/70‑1 (MQ=255) atgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaa > 1:1739624/1‑70 (MQ=255) tgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:1966318/71‑1 (MQ=255) tgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:4854950/71‑1 (MQ=255) tgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaa > 1:4019232/1‑70 (MQ=255) tgTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACCCTAAAGTATCaaaa < 1:1061153/71‑1 (MQ=255) gTTTCTGTTGTAGTGATATCTACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:611366/70‑1 (MQ=255) gTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAaca < 1:2125006/54‑1 (MQ=255) tttCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGt > 1:2967982/1‑45 (MQ=255) tttCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaaa < 1:1753864/70‑1 (MQ=255) ttCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAgg < 1:2646569/42‑1 (MQ=255) ttCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCa < 1:5109536/65‑1 (MQ=255) tCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAAc < 1:4741682/70‑1 (MQ=255) tCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAAc < 1:2971009/70‑1 (MQ=255) tgttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCt > 1:4542597/1‑71 (MQ=255) tgttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCt > 1:2141026/1‑71 (MQ=255) gttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTaaa < 1:1061919/55‑1 (MQ=255) ttgtAGTGATATCAACTctacaacagaaacatgcatgtcatttgttta > 1:4858833‑M2/1‑17 (MQ=255) ttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGc < 1:2760138/68‑1 (MQ=255) ttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGc < 1:1415475/68‑1 (MQ=255) ttgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCa < 1:4715981/71‑1 (MQ=255) tgtAGTGATATCAACTctacaacagaaacatgcatgtcatttgtttacttctct < 1:1006157‑M2/54‑39 (MQ=255) tgtAGTGATATCAACTctacaacagaaacatgcatctcatttgtttacttctc < 1:3566860‑M2/53‑38 (MQ=255) tgtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTaa > 1:24240/1‑52 (MQ=255) gtAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTAt > 1:543007/1‑56 (MQ=255) tAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACActct < 1:4932166/48‑1 (MQ=255) tGATATCAACTctacaacagaaacatgcatgtcatttgtttacttctctttttactacagaaaaatttatc > 1:1132701‑M2/1‑11 (MQ=255) tGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTa < 1:2148132/46‑1 (MQ=255) atatCAACTctacaacagaaacatgcatgtcatttgtttacttctctttttactacagaaaaatttatcta < 1:4969873‑M2/71‑63 (MQ=255) atatCAACTctacaacagaaacatgcatgtcatttgtttacttctctttttactacagaaaaatttatcta < 1:4964177‑M2/71‑63 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGa < 1:511520/35‑1 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTaaa > 1:1972152/1‑46 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:4570642/55‑1 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:5174118/55‑1 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaa < 1:2293823/55‑1 (MQ=255) atatCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTtaaa > 1:3072396/1‑70 (MQ=255) atCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAatta > 1:1399859/1‑71 (MQ=255) tCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAattat < 1:1411743/71‑1 (MQ=255) tCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAattat < 1:1217068/71‑1 (MQ=255) cAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCaaaaa > 1:741874/1‑52 (MQ=255) aaCTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAATTAttt < 1:722027/71‑1 (MQ=255) aaCTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAATTAttt < 1:1674792/71‑1 (MQ=255) aCTCTACACGGTGATATTAAAGGGTAGGAAACTCTCTAAAGTATCAAAAAACGCTCATTTAAAat < 1:3679264/65‑1 (MQ=255) | AATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAACACTCTAAAGTATCAAAAAACGCTCATTTAAAATTATTT > AP009048/4561049‑4561182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |