| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 533287 = | 75 (1.330) | 3 (0.060) | 3/90 | NT | 5.3% | coding (148/1782 nt) | gcl | glyoxylate carboligase |
| ? | AP009048 | 533311 = | 42 (0.850) | coding (172/1782 nt) | gcl | glyoxylate carboligase | |||||
GAGCTGCAATCAATCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTC > AP009048/533219‑533356 | cccgcaggaccggaagtccccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCAt > 1:1340898‑M1/69‑71 (MQ=255) ccgcaggaccggaagtccccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCAtg > 1:3876859‑M1/68‑71 (MQ=255) cgcaggaccggaagtccccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCAtg < 1:4283930‑M1/4‑1 (MQ=255) gCAATCAATCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCAt < 1:4038413/66‑1 (MQ=255) caatcaatCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTgg > 1:3795593/1‑69 (MQ=255) caatcaatCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTgg < 1:3484563/69‑1 (MQ=255) caatcaatCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGaa < 1:2211260/71‑1 (MQ=255) aatcaatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTgg > 1:1805349/1‑68 (MQ=255) aatcaatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAg < 1:2326750/71‑1 (MQ=255) aatcaatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAg > 1:3474318/1‑71 (MQ=255) tcaatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGt > 1:94318/1‑71 (MQ=255) caatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCa < 1:5074481/60‑1 (MQ=255) caatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTg > 1:3865092/1‑71 (MQ=255) aatcCGTTCTACTCAGCGATGCGTAAGCACTGCGGTATTCGTCACATTCTGGCGCGTCAtgt > 1:3730523/1‑62 (MQ=255) aatcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGc > 1:2872006/1‑71 (MQ=255) aatcCGTTCTACTCAACGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGc > 1:1519184/1‑71 (MQ=255) tcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTc < 1:134243/56‑1 (MQ=255) tcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCtt < 1:2676252/71‑1 (MQ=255) tcCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCtt < 1:1596826/71‑1 (MQ=255) agtccccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCAtg > 1:3921259‑M1/55‑58 (MQ=255) agtccccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCAtg > 1:466649‑M1/55‑58 (MQ=255) cGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAgg > 1:1732610/1‑64 (MQ=255) ttCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGa < 1:85724/59‑1 (MQ=255) ttCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGca > 1:1291630/1‑71 (MQ=255) ccagacatacgccgatattccctgccgttgcgcgggtataaccttccgcCATGTGGAAGGTGCTTCGcaca > 1:1767030‑M1/50‑71 (MQ=255) cTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGcaca > 1:1116683/1‑71 (MQ=255) cTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGcac < 1:4297869/70‑1 (MQ=255) tACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGc > 1:4668536/1‑67 (MQ=255) tACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACAt > 1:3027386/1‑71 (MQ=255) agacatacgccgatattccctgccgttgcgcgggtataaccttccgtCATGTGGAAGGTGCTTCGcaca < 1:226789‑M1/22‑1 (MQ=255) tCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAg < 1:3552086/55‑1 (MQ=255) tCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGc > 1:733074/1‑71 (MQ=255) cAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:968142/1‑71 (MQ=255) aGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCa > 1:914254/1‑45 (MQ=255) aGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:4115564/1‑70 (MQ=255) aGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:2976356/1‑70 (MQ=255) gCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa < 1:19388/71‑1 (MQ=255) gCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa < 1:956622/71‑1 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg > 1:5075527/1‑69 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg > 1:3878571/1‑69 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGaa < 1:2780712/71‑1 (MQ=255) gATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGaa > 1:2037702/1‑49 (MQ=255) aTGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCAt < 1:34891/42‑1 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATgg > 1:2008620/1‑63 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATgg > 1:4756902/1‑63 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGt < 1:4668082/71‑1 (MQ=255) gggTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGa < 1:3371303/43‑1 (MQ=255) gCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCa < 1:997520/39‑1 (MQ=255) gTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTc < 1:646464/52‑1 (MQ=255) gTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg < 1:4693901/63‑1 (MQ=255) gTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtat < 1:3438665/71‑1 (MQ=255) atattccctgccgttgcgcgggtataaccttccgcCATGTGGAAGGTGCTTCGcac > 1:5072418‑M1/36‑56 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtata < 1:1226725/71‑1 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtat < 1:3709035/70‑1 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGCAAGGTGCTTCGCACATGGCGGAAGGTtata < 1:2492506/71‑1 (MQ=255) aaGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGa < 1:4795085/41‑1 (MQ=255) aGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAc < 1:579559/70‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:1922234/71‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:933732/71‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAcc > 1:753373/1‑70 (MQ=255) aCGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCg < 1:2625559/47‑1 (MQ=255) cggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCcgcg > 1:2189750/1‑71 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCcgcg > 1:1139948/1‑70 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:3146749/71‑1 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:1791815/71‑1 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:4797438/71‑1 (MQ=255) gcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc > 1:1618795/1‑70 (MQ=255) gTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGcaca < 1:4076238/45‑1 (MQ=255) gTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGcaca < 1:1453163/45‑1 (MQ=255) gTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACg < 1:1720989/71‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTg > 1:2183800/1‑35 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGc < 1:1957912/41‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGc < 1:126903/41‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:424801/62‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAActg < 1:1135753/71‑3 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:2046034/1‑47 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACgg > 1:1638350/1‑69 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:4103313/70‑1 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:1387323/70‑1 (MQ=255) ttCGTCACATTCTCGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:444775/70‑1 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAg > 1:1420898/1‑49 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAgg > 1:4717015/1‑71 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAgg > 1:256312/1‑71 (MQ=255) gTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAggg < 1:4518123/71‑1 (MQ=255) gTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAggg < 1:150075/71‑1 (MQ=255) acaTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGaa > 1:83499/1‑70 (MQ=255) aTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:2148255/71‑1 (MQ=255) aTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:2049034/71‑1 (MQ=255) tCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa > 1:971560/1‑39 (MQ=255) tGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAgg < 1:4043130/40‑1 (MQ=255) gTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt > 1:2975652/1‑71 (MQ=255) tCATGTGGAAGGTGCTTCGCTCATGGCGGAAGGTTATACCCGCGCTACGGCAGGGAATATCGGCGTATGTc < 1:3947759/71‑1 (MQ=255) CATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:1434580‑M1/59‑1 (MQ=255) | GAGCTGCAATCAATCCGTTCTACTCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTC > AP009048/533219‑533356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |