| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 533287 = | 75 (1.330) | 3 (0.060) | 3/90 | NT | 5.3% | coding (148/1782 nt) | gcl | glyoxylate carboligase |
| ? | AP009048 | 533311 = | 42 (0.850) | coding (172/1782 nt) | gcl | glyoxylate carboligase | |||||
TCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTCCTGCGGGCACG > AP009048/533242‑533382 | tCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGc > 1:733074/1‑71 (MQ=255) cAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:968142/1‑71 (MQ=255) aGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:4115564/1‑70 (MQ=255) aGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:2976356/1‑70 (MQ=255) gCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa < 1:956622/71‑1 (MQ=255) gCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa < 1:19388/71‑1 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg > 1:3878571/1‑69 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg > 1:5075527/1‑69 (MQ=255) cGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGaa < 1:2780712/71‑1 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATgg > 1:2008620/1‑63 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATgg > 1:4756902/1‑63 (MQ=255) tGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGt < 1:4668082/71‑1 (MQ=255) gTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCgg < 1:4693901/63‑1 (MQ=255) gTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtat < 1:3438665/71‑1 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtata < 1:1226725/71‑1 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTtat < 1:3709035/70‑1 (MQ=255) tAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGCAAGGTGCTTCGCACATGGCGGAAGGTtata < 1:2492506/71‑1 (MQ=255) aGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAc < 1:579559/70‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:933732/71‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:1922234/71‑1 (MQ=255) gCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAcc > 1:753373/1‑70 (MQ=255) cggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCcgcg > 1:2189750/1‑71 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCcgcg > 1:1139948/1‑70 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:3146749/71‑1 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:4797438/71‑1 (MQ=255) ggcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc < 1:1791815/71‑1 (MQ=255) gcggTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCgcgc > 1:1618795/1‑70 (MQ=255) gTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACg < 1:1720989/71‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATAccc < 1:424801/62‑1 (MQ=255) tATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAActg < 1:1135753/71‑3 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCg > 1:2046034/1‑47 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACgg > 1:1638350/1‑69 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:4103313/70‑1 (MQ=255) ttCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:1387323/70‑1 (MQ=255) ttCGTCACATTCTCGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGc < 1:444775/70‑1 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAg > 1:1420898/1‑49 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAgg > 1:4717015/1‑71 (MQ=255) cGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAgg > 1:256312/1‑71 (MQ=255) gTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAggg < 1:4518123/71‑1 (MQ=255) gTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAggg < 1:150075/71‑1 (MQ=255) acaTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGaa > 1:83499/1‑70 (MQ=255) aTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:2148255/71‑1 (MQ=255) aTTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:2049034/71‑1 (MQ=255) tCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGa > 1:971560/1‑39 (MQ=255) tGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAgg < 1:4043130/40‑1 (MQ=255) gTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt > 1:2975652/1‑71 (MQ=255) tCATGTGGAAGGTGCTTCGCTCATGGCGGAAGGTTATACCCGCGCTACGGCAGGGAATATCGGCGTATGTc < 1:3947759/71‑1 (MQ=255) CATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat < 1:1434580‑M1/59‑1 (MQ=255) ATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCt > 1:754978‑M1/1‑70 (MQ=255) ATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTg < 1:4390984‑M1/71‑1 (MQ=255) ATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTg > 1:2569796‑M1/1‑71 (MQ=255) tgtgcgaagcaccttccacatgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTgg > 1:1767030‑M2/23‑71 (MQ=255) tgtgcgaagcaccttccacatgACGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCt < 1:226789‑M2/47‑1 (MQ=255) TGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACg < 1:3234211‑M1/46‑1 (MQ=255) TGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt < 1:1892738‑M1/67‑1 (MQ=255) gtgcgaagcaccttccacatgGCGGAAGGTTATACCCGCGCAACGGCAGGGAatat > 1:5072418‑M2/22‑56 (MQ=255) GGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTAt > 1:4459079‑M1/1‑62 (MQ=255) GGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTAt > 1:2805934‑M1/1‑62 (MQ=255) gAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTAt < 1:609530/61‑1 (MQ=255) aaGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACt < 1:1560069/71‑1 (MQ=255) aGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCa < 1:5097684/43‑1 (MQ=255) aGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt > 1:3571425/1‑61 (MQ=255) aGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACtt < 1:1368495/71‑1 (MQ=255) aGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACtt < 1:3611424/71‑1 (MQ=255) aGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACtt > 1:3872664/1‑71 (MQ=255) tGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCg < 1:198329/71‑1 (MQ=255) cTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt < 1:464050/56‑1 (MQ=255) cTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGt < 1:4514153/56‑1 (MQ=255) cTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCgg < 1:1654817/70‑1 (MQ=255) cGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTgg > 1:3194074/1‑57 (MQ=255) cGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTgg > 1:4326323/1‑57 (MQ=255) cGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTgg > 1:1653205/1‑57 (MQ=255) cGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTcc < 1:4656145/70‑1 (MQ=255) catgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACt > 1:3921259‑M2/5‑58 (MQ=255) catgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACt > 1:466649‑M2/5‑58 (MQ=255) catgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTCCTGCgg > 1:3876859‑M2/5‑71 (MQ=255) catgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTCCTGCg < 1:4283930‑M2/66‑1 (MQ=255) atgGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTCCTGCggg > 1:1340898‑M2/4‑71 (MQ=255) gCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCC‑GTCCTGCGGGCACg < 1:1762473/71‑1 (MQ=255) | TCAGCGATGCGTAAGCACGGCGGTATTCGTCACATTCTGGCGCGTCATGTGGAAGGTGCTTCGCACATGGCGGAAGGTTATACCCGCGCAACGGCAGGGAATATCGGCGTATGTCTGGGGACTTCCGGTCCTGCGGGCACG > AP009048/533242‑533382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |