| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1637071 = | 60 (0.850) | 7 (0.110) | 3/92 | NT | 10.6% | intergenic (+95/‑444) | acrD/yffB | aminoglycoside/multidrug efflux system/conserved hypothetical protein |
| ? | Exported | 1637110 = | 63 (0.970) | intergenic (+134/‑405) | acrD/yffB | aminoglycoside/multidrug efflux system/conserved hypothetical protein | |||||
AGAGGTTGTTATGATTGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1637144‑1637071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATA > Exported/1637110‑1637176 AGAGGTTGTTATGATTGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAAT < 1:1596676/71‑1 GAGGTTGTTATGATTGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAAT < 1:2606228/70‑1 GTTGTTATGATTGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAATTCC > 1:2647661/1‑70 TGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAAT > 1:2989301/1‑56 AAGACTTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCT > 1:2093665/1‑71 ACTTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAA < 1:1482307/54‑1 ACTTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAA < 1:1402853/54‑1 ACTTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAA < 1:4183326/54‑1 TTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAATC > 1:782958/1‑54 TTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAATC > 1:782004/1‑54 TTTATCGAAGTTATGCTTCGTAAGTAATTCCAGTTCCCCAGTTCACGTTCAATC > 1:468608/1‑54 TCCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATA > 1:2612824/1‑70 TCCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAA < 1:4239222/68‑1 TCCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTA > 1:3121894/1‑48 CCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTA > 1:2731062/1‑58 CCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTA > 1:2725683/1‑58 CCAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGG < 1:4074462/50‑1 CAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCT < 1:3108251/38‑1 CAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCT < 1:2625793/38‑1 AGAGGTTGTTATGATTGAACGTGAACTGGGGAACTGGAAAGACTTTATCGAAGTTATGCTTCGTAAGTAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1637144‑1637071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccAGTTCCCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATA > Exported/1637110‑1637176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |