| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1637071 = | 60 (0.850) | 7 (0.110) | 3/92 | NT | 10.6% | intergenic (+95/‑444) | acrD/yffB | aminoglycoside/multidrug efflux system/conserved hypothetical protein |
| ? | Exported | 1637110 = | 63 (0.970) | intergenic (+134/‑405) | acrD/yffB | aminoglycoside/multidrug efflux system/conserved hypothetical protein | |||||
GTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATAACAAC > Exported/1637002‑1637140 | gtgtCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAg > 1:433855/1‑70 (MQ=255)gtgtCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAg > 1:2512812/1‑70 (MQ=255) tattgtttccgtagaatacccataattataagagaggttgttatgattgaacgtgaactggggaactGGa > 1:2612824‑M1/68‑70 (MQ=255) ttgtttccgtagaatacccataattataagagaggttgttatgattgaacgtgaactggggaactGGa < 1:4239222‑M1/3‑1 (MQ=255) gCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAAtta > 1:703655/1‑71 (MQ=255) cTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAAttact > 1:233174/1‑71 (MQ=255) tttCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAAttacttac > 1:1084303/1‑71 (MQ=255) ttCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAAttacttac > 1:981124/1‑70 (MQ=255) tagaatacccataattataagagaggttgttatgattgaacgtgaactggggaactgg > 1:2731062‑M1/57‑58 (MQ=255) tagaatacccataattataagagaggttgttatgattgaacgtgaactggggaactgg > 1:2725683‑M1/57‑58 (MQ=255) tCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCAt < 1:647525/69‑1 (MQ=255) tCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATaa > 1:4123196/1‑71 (MQ=255) tCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATa < 1:1148460/70‑1 (MQ=255) ccataattataagagaggttgttatgattgaacgtgaactggggaactgg < 1:4074462‑M1/2‑1 (MQ=255) cGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACt > 1:344735/1‑71 (MQ=255) ttAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTc > 1:474997/1‑70 (MQ=255) ttAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTc > 1:2375983/1‑70 (MQ=255) taattataagagaggttgttatgattgaacgtgaactggggaactGGa > 1:3121894‑M1/46‑48 (MQ=255) aGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGAt > 1:2734120/1‑70 (MQ=255) aGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGAt > 1:2573618/1‑70 (MQ=255) ccTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGt > 1:2154304/1‑71 (MQ=255) cTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGaa < 1:324475/52‑1 (MQ=255) cTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCAt < 1:726488/56‑1 (MQ=255) cTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCAt < 1:1995866/56‑1 (MQ=255) cTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTc < 1:3818915/71‑1 (MQ=255) agagaggttgttatgattgaacgtgaactggggaactg < 1:3108251‑M1/1‑1 (MQ=255) agagaggttgttatgattgaacgtgaactggggaactg < 1:2625793‑M1/1‑1 (MQ=255) tGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGc > 1:3565538/1‑53 (MQ=255) tGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGc > 1:246773/1‑53 (MQ=255) tGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATaa > 1:1659645/1‑57 (MQ=255) gCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCa > 1:3357806/1‑53 (MQ=255) agaggttgttatgattgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATAAAGTCtt > 1:2093665‑M1/36‑71 (MQ=255) tCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAAc > 1:1750382/1‑55 (MQ=255) cAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGAt > 1:127224/1‑60 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTcc < 1:932742/70‑1 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTcc < 1:3836753/70‑1 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTc < 1:3609619/69‑1 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTc < 1:1928399/69‑1 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTc < 1:2488894/69‑1 (MQ=255) aGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTc < 1:3609388/69‑1 (MQ=255) aGCGGGTTCTT‑CTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAg < 1:1784007/71‑1 (MQ=255) cGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCttt < 1:1597982/66‑1 (MQ=255) ggTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATa < 1:2415840/56‑1 (MQ=255) ggTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATa < 1:2879085/56‑1 (MQ=255) ggTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTcc > 1:2364651/1‑66 (MQ=255) ttCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTccc < 1:271117/71‑1 (MQ=255) gattgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATaaa > 1:468608‑M1/24‑54 (MQ=255) gattgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATaaa > 1:782004‑M1/24‑54 (MQ=255) gattgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATaaa > 1:782958‑M1/24‑54 (MQ=255) ttgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATAAAGt < 1:4183326‑M1/33‑1 (MQ=255) ttgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATAAAGt < 1:1402853‑M1/33‑1 (MQ=255) ttgaacgtgaactggggaactGGAATTACTTACGAAGCATAACTTCGATAAAGt < 1:1482307‑M1/33‑1 (MQ=255) gCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTc > 1:2082741/1‑64 (MQ=255) gCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGtt > 1:2723586/1‑71 (MQ=255) gCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGtt > 1:369975/1‑71 (MQ=255) cTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCa < 1:1107052/67‑1 (MQ=255) tGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAg < 1:3225137/59‑1 (MQ=255) tGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAg < 1:1317428/59‑1 (MQ=255) tGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAg < 1:817021/59‑1 (MQ=255) tGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAg < 1:3937636/59‑1 (MQ=255) tGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCa > 1:3296496/1‑71 (MQ=255) tttGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGtt > 1:2208109/1‑59 (MQ=255) tttGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACg > 1:2459660/1‑71 (MQ=255) tGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTcccc > 1:4191233/1‑61 (MQ=255) tGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTcccc > 1:2010751/1‑61 (MQ=255) tGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGtt > 1:1073274/1‑71 (MQ=255) cTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCa > 1:3438195/1‑63 (MQ=255) cTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCa > 1:2036106/1‑63 (MQ=255) cTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCa > 1:2114400/1‑63 (MQ=255) tttGTCTCAGGAATTACTTACGAAGCATAACTTCGAt < 1:427719/37‑1 (MQ=255) tttGTCTCAGGAATTACTTACGAAGCATAACTTCGAt < 1:749674/37‑1 (MQ=255) tttGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTcc < 1:2234524/48‑1 (MQ=255) tGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGt > 1:1156021/1‑63 (MQ=255) tGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATc < 1:1542226/69‑1 (MQ=255) tGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATc < 1:2333903/69‑1 (MQ=255) tGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCa < 1:2800788/70‑1 (MQ=255) tGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCa > 1:2518296/1‑70 (MQ=255) tctcAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATaa > 1:3486084/1‑71 (MQ=255) tctcAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATa < 1:1807960/70‑1 (MQ=255) aGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATaac < 1:671364/68‑1 (MQ=255) aGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATaac < 1:4156506/68‑1 (MQ=255) aGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATaac < 1:3710385/68‑1 (MQ=255) GGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATaacaac > 1:2647661‑M1/1‑70 (MQ=255) | GTGTCGCCTTTTTCAACTTTCCGATTAAGAACCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCCCCAGTTCACGTTCAATCATAACAAC > Exported/1637002‑1637140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |