| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2816800 = | 72 (0.680) | 4 (0.040) | 3/86 | NT | 6.0% | intergenic (+17/‑80) | soxR/nrfA | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing/nitrite reductase, formate‑dependent, cytochrome |
| ? | Exported | 2816824 = | 62 (0.670) | intergenic (+41/‑56) | soxR/nrfA | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing/nitrite reductase, formate‑dependent, cytochrome | |||||
TCATCCGAATTGCGCCATTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2816872‑2816800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtcGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGA > Exported/2816824‑2816869 TCATCCGAATTGCGCCATTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTG > 1:1298903/1‑71TCATCCGAATTGCGCCATTGTTGAAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTG > 1:1010040/1‑71TCATCAGAATTGCGCCATTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTG > 1:4634327/1‑71 TTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACT > 1:2265028/1‑53 TTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACT > 1:5428449/1‑53 TTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTGTC < 1:1810613/41‑1 ACGACAGTAACCGCACCTACACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCG > 1:794395/1‑70 ACGACAGTAACCGCACCTACACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCG < 1:6711680/70‑1 ACGACAGTAACCGCACCTACACTGTCGTGAAAAACAATAAAAACCGCC > 1:1178290/1‑48 AACCGCACCTACACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAA > 1:6474134/1‑58 ACTGTCGTGAAAAACAATAAAAACCGCCATTTCAACAATGGCGCAATTCGGA > 1:2422808/1‑52 ACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGA > 1:243249/1‑52 TGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGG > 1:328133/1‑49 TGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGG > 1:5246221/1‑49 GTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCG < 1:5595715/47‑1 CGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGA > 1:3816075/1‑47 CGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGA > 1:2702997/1‑47 CGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGG > 1:1391869/1‑46 TCATCCGAATTGCGCCATTGTTGCAATGGCGGTTTTTATTGTTTTTCACGACAGTAACCGCACCTACACTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2816872‑2816800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtcGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGA > Exported/2816824‑2816869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |