| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2816800 = | 72 (0.680) | 4 (0.040) | 3/86 | NT | 6.0% | intergenic (+17/‑80) | soxR/nrfA | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing/nitrite reductase, formate‑dependent, cytochrome |
| ? | Exported | 2816824 = | 62 (0.670) | intergenic (+41/‑56) | soxR/nrfA | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing/nitrite reductase, formate‑dependent, cytochrome | |||||
GCGTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCG > Exported/2816738‑2816867 | gCGTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAgtg > 1:1091651/1‑69 (MQ=255) cGTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAg > 1:5294967/1‑71 (MQ=255) gTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAgtgt < 1:6682129/68‑1 (MQ=255) gTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAgtgt < 1:1356491/68‑1 (MQ=255) tAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGCGGCGAGCAATGTCATGACAGTGTAGGt < 1:359810/71‑1 (MQ=255) ccGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGa < 1:5537167/57‑1 (MQ=255) ccGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGa < 1:4739335/57‑1 (MQ=255) cGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt < 1:1385908/71‑1 (MQ=255) gggCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt > 1:438311/1‑70 (MQ=255) tccgaattgcgccattgttgcaatggcggtttttattgtttttcacg > 1:2702997‑M1/47‑47 (MQ=255) tccgaattgcgccattgttgcaatggcggtttttattgtttttcacg > 1:3816075‑M1/47‑47 (MQ=255) tccgaattgcgccattgttgcaatggcggtttttattgtttttcacGACAgt > 1:243249‑M1/47‑52 (MQ=255) tccgaattgcgccattgttgaaatggcggtttttattgtttttcacGACAgt > 1:2422808‑M1/47‑52 (MQ=255) ccgaattgcgccattgttgcaatggcggtttttattgtttttcacg > 1:1391869‑M1/46‑46 (MQ=255) ccgaattgcgccattgttgcaatggcggtttttattgtttttcacGACa > 1:5246221‑M1/46‑49 (MQ=255) ccgaattgcgccattgttgcaatggcggtttttattgtttttcacGACa > 1:328133‑M1/46‑49 (MQ=255) cgaattgcgccattgttgcaatggcggtttttattgtttttcacGAc < 1:5595715‑M1/3‑1 (MQ=255) cgaattgcgccattgttgcaatggcggtttttattgtttttcacGACAGTGTAGGTGCGGTTACTGTCGt < 1:6711680‑M1/26‑1 (MQ=255) cgaattgcgccattgttgcaatggcggtttttattgtttttcacGACAGTGTAGGTGCGGTTACTGTCGt > 1:794395‑M1/45‑70 (MQ=255) tAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGa > 1:4553444/1‑70 (MQ=255) ttgcgccattgttgcaatggcggtttttattgtttttcacGACAGTGTAGGTGCGGtt > 1:6474134‑M1/41‑58 (MQ=255) gagaAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGaaa < 1:156724/70‑1 (MQ=255) gagaAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGaaa < 1:4249031/70‑1 (MQ=255) gagaAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGaaa < 1:1871629/70‑1 (MQ=255) gagaAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGaaa > 1:6055940/1‑70 (MQ=255) gaagGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTa > 1:1404652/1‑54 (MQ=255) gaagGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAAt < 1:2830381/71‑1 (MQ=255) agGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaa < 1:2108341/71‑1 (MQ=255) ggTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:4463148/71‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 1:5620532/71‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 1:1454973/71‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 1:4809078/71‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 1:6042894/71‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa > 1:1338590/1‑70 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:5914967/70‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:6125116/70‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:1555744/70‑1 (MQ=255) gTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:4040718/70‑1 (MQ=255) ccGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa < 1:6597377/69‑1 (MQ=255) ggCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGt < 1:3206086/52‑1 (MQ=255) ggCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc < 1:1862313/71‑1 (MQ=255) gcgcACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc < 1:579829/71‑1 (MQ=255) cgcACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCa < 1:1273083/71‑1 (MQ=255) cgcACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCa < 1:1829174/71‑1 (MQ=255) ggcggtttttattgtttttcacGACAGTGTAGGTGCGGTTACTGTCGt > 1:1178290‑M1/23‑48 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:3725078/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:295292/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:5311997/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:5509391/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:1717834/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:3326786/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:5973813/38‑1 (MQ=255) cTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:720661/38‑1 (MQ=255) tAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGtt < 1:594793/37‑1 (MQ=255) aGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt > 1:4484785/1‑35 (MQ=255) aGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt > 1:4724361/1‑35 (MQ=255) aGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt > 1:2321538/1‑35 (MQ=255) aGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGt > 1:70715/1‑35 (MQ=255) aGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTGCTGTCGTGAAAAACAATAAAAAc > 1:2765572/1‑60 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa > 1:24890/1‑58 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa > 1:2909672/1‑58 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa > 1:5377897/1‑58 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa > 1:3287082/1‑58 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa > 1:2985972/1‑57 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa > 1:6367761/1‑57 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaac < 1:195871/71‑1 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaac < 1:1682667/71‑1 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaac < 1:3368088/71‑1 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaa < 1:6930026/70‑1 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaa < 1:2773238/70‑1 (MQ=255) ggggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGc > 1:5520149/1‑68 (MQ=255) gggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaaca < 1:519923/71‑1 (MQ=255) ggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaacaa < 1:288944/71‑1 (MQ=255) ggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaacaa < 1:1200702/71‑1 (MQ=255) ggCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaacaa < 1:3148177/71‑1 (MQ=255) gCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGcaa > 1:3858556/1‑67 (MQ=255) gCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAAt < 1:4273406/71‑1 (MQ=255) cGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:6791400/52‑1 (MQ=255) cGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:6799464/52‑1 (MQ=255) gCAATGTCATGACAGTGTAGGTGCGGTTACTTTCGt < 1:4190418/36‑1 (MQ=255) gCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGgcg > 1:2729262/1‑71 (MQ=255) gCAATGTCATGACAGTATAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGgcg > 1:5685453/1‑71 (MQ=255) cAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGgcg > 1:1057431/1‑70 (MQ=255) tGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc < 1:1163757/51‑1 (MQ=255) tGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc < 1:6291628/51‑1 (MQ=255) tGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc < 1:5128814/51‑1 (MQ=255) tCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCaa > 1:6877099/1‑68 (MQ=255) tCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCa > 1:4125993/1‑67 (MQ=255) aTGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCg < 1:6642459/70‑1 (MQ=255) aTGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCg < 1:4700222/70‑1 (MQ=255) aTGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCg < 1:256125/70‑1 (MQ=255) GACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaaa < 1:1810613‑M1/41‑1 (MQ=255) | GCGTAACCCGGGCGACCGCTTAGAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCG > Exported/2816738‑2816867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |