New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 29683158 (0.990)4 (0.080) 4/88 NT 7.3% coding (185/411 nt) yagP predicted transcriptional regulator
?AP009048 = 296842 52 (1.030)coding (174/411 nt) yagP predicted transcriptional regulator

GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/296759‑296831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  AP009048/296842‑296773
                                                                                                                                               
GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA                                                                           <  1:1212849/70‑1
     GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG                                                                             <  1:4725428/63‑1
     GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG                                                                             <  1:5091923/63‑1
           TTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAA                                                               >  1:3002052/1‑71
                     GCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA                                                                           >  1:4342189/1‑49
                       AATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT                                                                        <  1:2120702/50‑1
                         TTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAG                                                                          <  1:1433016/46‑1
                           GTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC                                                       <  1:5124141/63‑1
                                     CGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC                                                       >  1:1229941/1‑53
                                          GCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGCGT                                                     >  1:5050244/1‑50
                                                                  CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGC         >  1:1297943/1‑70
                                                                  CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTT                                <  1:1185048/47‑1
                                                                  CGCAGATTACGACTAATGATCTGCGTCTGATGTTGA                                           <  1:1952716/36‑1
                                                                   GCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCA       >  1:1304917/1‑71
                                                                    CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCGGGCGGAGGAATAACAATTGCCAC      >  1:2817761/1‑71
                                                                    CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC      >  1:1948315/1‑71
                                                                    CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC      >  1:5240560/1‑71
                                                                    CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATT           >  1:4672979/1‑66
                                                                     AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     >  1:620213/1‑71
                                                                     AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     <  1:3647681/71‑1
                                                                     AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     <  1:1575134/71‑1
                                                                       ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA   <  1:3198407/71‑1
                                                                       ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAA             <  1:5190876/61‑1
                                                                       ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAAC               <  1:3328433/59‑1
                                                                        TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  1:4515596/71‑1
                                                                        TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA   <  1:2944650/70‑1
                                                                                                                                               
GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/296759‑296831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  AP009048/296842‑296773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.