| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 296831 | 58 (0.990) | 4 (0.080) | 4/88 | NT | 7.3% | coding (185/411 nt) | yagP | predicted transcriptional regulator |
| ? | AP009048 | = 296842 | 52 (1.030) | coding (174/411 nt) | yagP | predicted transcriptional regulator | |||||
CTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGGCGCAAC > AP009048/296773‑296910 | cTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTa < 1:4219085/70‑1 (MQ=255)cTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTa < 1:3656075/70‑1 (MQ=255)cTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAa < 1:4515596‑M2/71‑2 (MQ=255) tGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAat < 1:3198407‑M2/71‑3 (MQ=255) tGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAa < 1:2944650‑M2/70‑2 (MQ=255) aGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatct < 1:3647681‑M2/71‑5 (MQ=255) aGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatct > 1:620213‑M2/1‑67 (MQ=255) aGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatct < 1:1575134‑M2/71‑5 (MQ=255) gTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctg > 1:5240560‑M2/1‑66 (MQ=255) gTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctg > 1:1948315‑M2/1‑66 (MQ=255) gTGGCAATTGTTATTCCTCCGCCCGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctg > 1:2817761‑M2/1‑66 (MQ=255) tGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctgc > 1:1304917‑M2/1‑65 (MQ=255) gCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctgcg > 1:1297943‑M2/1‑63 (MQ=255) gCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCgg > 1:3508235/1‑71 (MQ=255) cAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGt < 1:5119808/71‑1 (MQ=255) aaTTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctg > 1:4672979‑M2/1‑61 (MQ=255) aTTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc < 1:2570022/71‑1 (MQ=255) aTTGTTATTCCTCCGCCGGCAAGAGCCAGCATCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGtt > 1:988582/1‑70 (MQ=255) ttGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAat < 1:5190876‑M2/61‑3 (MQ=255) ttGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc > 1:136887/1‑70 (MQ=255) ttGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCa < 1:774426/71‑1 (MQ=255) gTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAat < 1:3328433‑M2/59‑3 (MQ=255) gTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCaa < 1:1367343/70‑1 (MQ=255) gTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCaa < 1:4377813/70‑1 (MQ=255) gTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCaa < 1:3684232/70‑1 (MQ=255) aTTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATc > 1:3448531/1‑69 (MQ=255) ttCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGc > 1:562141/1‑70 (MQ=255) tcctccGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGc > 1:2548544/1‑69 (MQ=255) tcctccGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGc > 1:763762/1‑69 (MQ=255) tccGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc < 1:4122624/60‑1 (MQ=255) tccGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAg < 1:56310/69‑1 (MQ=255) tccGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGt > 1:2521513/1‑71 (MQ=255) ccgccgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTc > 1:4347588/1‑71 (MQ=255) cgccgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCaa < 1:2957822/60‑1 (MQ=255) ccgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTa < 1:1175622/45‑1 (MQ=255) ccgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGaa < 1:4768860/71‑1 (MQ=255) ccgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAAACGCAAGGTCGa > 1:2229722/1‑70 (MQ=255) cgGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAg > 1:3086568/1‑64 (MQ=255) ggCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAg < 1:1962685/71‑1 (MQ=255) ggCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAg < 1:3877058/71‑1 (MQ=255) gCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCg < 1:614410/58‑1 (MQ=255) cAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGtt < 1:4556117/71‑1 (MQ=255) aaGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAatctgcg < 1:1185048‑M2/47‑8 (MQ=255) gagCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc > 1:1828830/1‑49 (MQ=255) gagCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc > 1:808947/1‑49 (MQ=255) gagCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTc > 1:1793598/1‑61 (MQ=255) gagCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTtctc > 1:600027/1‑71 (MQ=255) ccagccTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGtt < 1:674585/45‑1 (MQ=255) cagccTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCg < 1:3007052/70‑1 (MQ=255) cagccTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGt > 1:99126/1‑71 (MQ=255) agccTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGtt < 1:4006156/71‑1 (MQ=255) agccTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGtt > 1:4223286/1‑71 (MQ=255) cTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGa < 1:603661/55‑1 (MQ=255) tCAACATCAGACGCAGATCATTAGTCGTAatctgcg < 1:1952716‑M2/36‑8 (MQ=255) tCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTc < 1:818610/40‑1 (MQ=255) cAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTttctt > 1:4787810/1‑71 (MQ=255) aaCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAAt > 1:4008390/1‑41 (MQ=255) aaCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTttctt < 1:313866/70‑1 (MQ=255) aCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCa < 1:3717957/71‑1 (MQ=255) aCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCa < 1:3509192/71‑1 (MQ=255) aCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCa < 1:4782570/71‑1 (MQ=255) aCATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCa < 1:600820/71‑1 (MQ=255) tCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAAt > 1:2944358/1‑71 (MQ=255) gACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGc > 1:1311584/1‑71 (MQ=255) gACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGc > 1:5364311/1‑71 (MQ=255) gACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGc < 1:4088018/71‑1 (MQ=255) aCGCAGATCATTAGTCGTAatctgcgtctgatgttgaggctggctcttgc > 1:5050244‑M2/1‑19 (MQ=255) gCAGATCATTAGTCGTAatctgcgtctgatgttgaggctggctcttgccggcggaggaataac < 1:5124141‑M2/63‑47 (MQ=255) gCAGATCATTAGTCGTAatctgcgtctgatgttgaggctggctcttgccggcg > 1:1229941‑M2/1‑17 (MQ=255) gCAGATCATTAGTCGTAATCTGCGGTTCAATCGCa < 1:4862160/35‑1 (MQ=255) gCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAg < 1:253211/71‑1 (MQ=255) cAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGt > 1:5238201/1‑45 (MQ=255) cAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTttc < 1:3147270/57‑1 (MQ=255) cAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGc < 1:2055311/71‑1 (MQ=255) gATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGaa < 1:1052757/40‑1 (MQ=255) aTCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTtc < 1:5319805/44‑1 (MQ=255) aTCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTttct < 1:3102060/55‑1 (MQ=255) aTCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAg < 1:3577541/67‑1 (MQ=255) cATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCTAAt < 1:586876/59‑1 (MQ=255) cATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGAt > 1:3560574/1‑69 (MQ=255) aTTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGaa < 1:4632109/36‑1 (MQ=255) aTTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATaa < 1:3896009/70‑1 (MQ=255) aTTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAg < 1:415338/71‑1 (MQ=255) ttAGTCGTAatctgcgtctgatgttgaggctggctcttgccggcggaggaataacaattgccactcaggaa > 1:3002052‑M2/1‑9 (MQ=255) tAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGgc > 1:645366/1‑71 (MQ=255) gTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGgcgc < 1:3422376/71‑1 (MQ=255) gTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTttcttc < 1:3836616/47‑1 (MQ=255) gTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATaa > 1:1816294/1‑63 (MQ=255) gTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGGCGCaa > 1:2790602/1‑70 (MQ=255) gTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGGCGCAAc > 1:5072514/1‑71 (MQ=255) | CTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATCATTAGTCGTAATCTGCGGTTCAATCGCAAGGTCGAAAGTTCTCCCGTTTTCTTCAAATGGCCAGCGATAAGGCGCAAC > AP009048/296773‑296910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |