New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	949148 =	50 (0.850)	3 (0.050)	3/96	NT	7.0%	coding (843/909 nt)	ycaN	predicted DNA‑binding transcriptional regulator
	?	AP009048	949177 =	33 (0.600)					coding (814/909 nt)	ycaN	predicted DNA‑binding transcriptional regulator

GGAAGACTGGAGCACAGAGCGTCCAGGCTTCCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/949220‑949148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGT  >  AP009048/949177‑949215                                                                                                                  GGAAGACTGGAGCACAGAGCGTCCAGGCTTCCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCT                                           >  1:5082416/1‑71  GAAGACTGGAGCACAGAGCGTCCAGGCTTCCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTT                                          <  1:4892049/71‑1                 GAGCGTCCAGGCTTCCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTT                                          <  1:893453/56‑1                                         TATCCAAACCGCCAGTATATGTCCTGCGGCTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAG   >  1:2547321/1‑71                                               AACCGCCAGTATATGTCCTGCGGCTTGGATAATAGATCTGGAAGCCTGGACGCT              >  1:1621791/1‑54                                                ACCGCCAGTATATGTCCTGCGGCTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGT  <  1:1020961/65‑1                                                                                                                  GGAAGACTGGAGCACAGAGCGTCCAGGCTTCCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/949220‑949148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGT  >  AP009048/949177‑949215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.