| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 949148 = | 50 (0.850) | 3 (0.050) | 3/96 | NT | 7.0% | coding (843/909 nt) | ycaN | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 949177 = | 33 (0.600) | coding (814/909 nt) | ycaN | predicted DNA‑binding transcriptional regulator | |||||
GCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATC > AP009048/949109‑949246 | gCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTgg < 1:2617940/69‑1 (MQ=255) ctggagcacagagcgtccaggcttccagatctattatcCAAGCCGCAGGACATATACTGGCGGTTTGGata > 1:2547321‑M1/39‑71 (MQ=255) cAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGata < 1:3315799/71‑1 (MQ=255) cTGACCCGTTTTTACATAATCGAGGAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataa > 1:5061263/1‑67 (MQ=255) tGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGa > 1:4010915/1‑70 (MQ=255) cGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGa < 1:1317624/71‑1 (MQ=255) gTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGa < 1:1182908/57‑1 (MQ=255) gTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTgg > 1:1525168/1‑69 (MQ=255) gTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGa < 1:3758376/70‑1 (MQ=255) tttttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataa < 1:612353/59‑1 (MQ=255) tttttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAg < 1:5280353/71‑1 (MQ=255) tttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataata > 1:480067/1‑59 (MQ=255) ttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGcc < 1:773660/70‑1 (MQ=255) tAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACg > 1:3396755/1‑71 (MQ=255) tAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACg < 1:2452796/71‑1 (MQ=255) tAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACg > 1:223458/1‑71 (MQ=255) aaTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGc > 1:1861603/1‑71 (MQ=255) aTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTg > 1:1179399/1‑65 (MQ=255) aTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGct < 1:3702880/71‑1 (MQ=255) aTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGct < 1:2358498/71‑1 (MQ=255) gagaAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCtg > 1:1203800/1‑71 (MQ=255) agaAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGctct < 1:3757187/69‑1 (MQ=255) aaaTGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGc < 1:2783597/71‑1 (MQ=255) tatccaaaccgccagtatatgtcctgcggcttgGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAg > 1:2547321‑M2/34‑71 (MQ=255) AAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGctc < 1:893453‑M1/56‑1 (MQ=255) AAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTc < 1:4892049‑M1/71‑1 (MQ=255) aaccgccagtatatgtcctgcggcttgGATAATAGATCTGGAAGCCTGGACGct > 1:1621791‑M2/28‑54 (MQ=255) AGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTcc > 1:5082416‑M1/1‑71 (MQ=255) gCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTc > 1:5255546/1‑69 (MQ=255) accgccagtatatgtcctgcggcttgGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGt < 1:1020961‑M2/39‑1 (MQ=255) cGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGa > 1:4618928/1‑47 (MQ=255) cGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAg > 1:2413735/1‑70 (MQ=255) cAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGa > 1:3361088/1‑45 (MQ=255) cAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGa > 1:5136018/1‑45 (MQ=255) cAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTa > 1:4184620/1‑70 (MQ=255) aCATATACTGGCGGTTTGGATAATAGATCTGGAAGCCt < 1:4144939/38‑1 (MQ=255) cATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGctct > 1:4699165/1‑46 (MQ=255) cATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACAtt > 1:2543460/1‑71 (MQ=255) atatACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCtgtg < 1:3914931/48‑1 (MQ=255) taCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGctct > 1:638188/1‑42 (MQ=255) taCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTAcaca < 1:104829/65‑1 (MQ=255) taCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTa < 1:572509/70‑1 (MQ=255) taCTGGAGGTTTGGATAATAGATCTGGAAGCCTGGGCGCTCTGTGCTCCAGTCTTCCAGTACACATTCTa > 1:2455884/1‑70 (MQ=255) cTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCtgtg > 1:450840/1‑43 (MQ=255) cTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTaaa > 1:2554737/1‑70 (MQ=255) tcGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTa > 1:3583128/2‑65 (MQ=255) gCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTa > 1:3807757/1‑65 (MQ=255) gCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACg < 1:1972195/69‑1 (MQ=255) tttGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAg > 1:5351761/1‑70 (MQ=255) gATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATc < 1:4016964/70‑1 (MQ=255) gATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATc < 1:1642921/70‑1 (MQ=255) | GCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATC > AP009048/949109‑949246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |