| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1383523 = | 33 (0.560) | 3 (0.060) | 3/90 | NT | 8.6% | coding (21/114 nt) | ymjB | hypothetical protein |
| ? | AP009048 | 1383562 = | 35 (0.680) | coding (60/114 nt) | ymjB | hypothetical protein | |||||
TTCTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1383595‑1383523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatttTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAG > AP009048/1383562‑1383629 TTCTGCATCAAAGAAATGACATTTCGTCATAGCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCA > 1:4923611/1‑70 TCTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCAT < 1:1278264/70‑1 TCTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCAT < 1:4112188/70‑1 TCTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCAT < 1:3536996/70‑1 CTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATT < 1:1608054/70‑1 CTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTG‑ATGATAATCATTT < 1:3495387/70‑1 CATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTT < 1:2172224/68‑1 CATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTT < 1:1724544/68‑1 CATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTT < 1:5144547/68‑1 GAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTTTGAAATGACa > 1:2018818/1‑70 TCGTCATATCAAAATGAATAGTGATATTTTCTCTTGCATGATAATCAT > 1:1253264/1‑48 ATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCAT > 1:5079294/1‑43 AAATGAATAGTGATATTTTCTCCTGCATGATAATC < 1:4618041/35‑1 ATGAATAGTGATATTTTCTCCTGCATGATAATCATTTTGATATGACGAAATGTCATTTCTTTGA > 1:2889983/1‑64 ATTTTCTCCTGCATGATAATCATTTTGATATGACGAAATGTCATTTCTTT < 1:4615274/50‑1 TTTTGATATGACGAAATGTCATTTGTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATTCAG < 1:3991950/64‑1 TTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAG < 1:820516/71‑1 TTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATA > 1:4866079/1‑59 TTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATA > 1:2914178/1‑44 TTCTGCATCAAAGAAATGACATTTCGTCATATCAAAATGAATAGTGATATTTTCTCCTGCATGATAATCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1383595‑1383523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatttTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAG > AP009048/1383562‑1383629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |