New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 193804441 (0.700)4 (0.080) 3/88 NT 10.2% intergenic (‑16/‑322) zwf/yebK glucose‑6‑phosphate dehydrogenase/predicted DNA‑binding transcriptional regulator
?AP009048 = 1938057 35 (0.690)intergenic (‑29/‑309) zwf/yebK glucose‑6‑phosphate dehydrogenase/predicted DNA‑binding transcriptional regulator

GGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1937968‑1938044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaagtACCGGGTTAGTTAACTTAAGGAGAATGACATGGCGGTAACGCAAACAGCCCAGGCCTGTGACCTGG  <  AP009048/1938057‑1937992
                                                                                                                                               
GGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCC                                                                          <  1:250276/71‑1
GGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCC                                                                          >  1:3587329/1‑71
  TCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCT                                                                         >  1:120138/1‑70
  TCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCT                                                                         >  1:4425150/1‑70
    GCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTT                                                                        >  1:1725552/1‑69
       TTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGT                                                                    >  1:4414265/1‑70
                 AAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTT                                                                        <  1:3073147/56‑1
                    ATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGTACCGGGTTAGTTAA                                                      <  1:4375666/71‑1
                       ACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGTACCGGGTTAGTTAACT                                                    >  1:4221935/1‑70
                               ACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGTACCGGGTTAGTTAA                                                      <  1:3572021/60‑1
                                CAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTT                                                                        <  1:126971/41‑1
                                     CTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTT                                                                        >  1:2670596/1‑36
                                                  GTTACCGCCATGTCATTCTCCTTAAGTACCGGGTTAG                                                          <  1:2045746/37‑1
                                                                        TAAGTACCGGGTTAGTTAACTTAAGGAGAATGACATGGCGGTAACGCAAACAGCCCAGGCCTGTGACCTGG  >  1:619509/1‑71
                                                                         AAGTACCGGGTTAGTTAACTTAAGGAGAATGACATGGCGGTAACGCAAACAGCCCAGGCCTGTGACCTGG  <  1:3879995/70‑1
                                                                         AAGTACCGGGTTAGTTAACTTAAGGAGAATGACATGGCGGTAACGCAAACAGCCCAGGCCTGTGACCTGG  <  1:4110195/70‑1
                                                                                                                                               
GGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1937968‑1938044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaagtACCGGGTTAGTTAACTTAAGGAGAATGACATGGCGGTAACGCAAACAGCCCAGGCCTGTGACCTGG  <  AP009048/1938057‑1937992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.