| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1990175 = | 57 (0.970) | 3 (0.060) | 3/82 | NT | 6.5% | intergenic (‑280/‑184) | yecJ/yecR | hypothetical protein/hypothetical protein |
| ? | AP009048 | 1990199 = | 41 (0.870) | intergenic (‑304/‑160) | yecJ/yecR | hypothetical protein/hypothetical protein | |||||
TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1990254‑1990175‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacataaaTACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG > AP009048/1990199‑1990264 TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTA > 1:5164588/1‑71 AATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATA < 1:2867722/71‑1 TGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTA > 1:4502569/1‑46 TATGTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAATGATAA > 1:3527784/1‑50 ATGTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAA < 1:1969794/43‑1 GTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAATGA > 1:3289930/1‑44 ATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTA > 1:2047065/1‑70 ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGA < 1:451034/71‑1 ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG < 1:3240398/70‑1 ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG < 1:5160621/70‑1 ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG < 1:900338/70‑1 ATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG < 1:4670325/71‑1 ATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCT < 1:4473701/57‑1 AAATACCCCTTTAATGTTATAAAAATGATAATCAAAAA < 1:1165320/38‑1 AAATACCCCTTTAATGTTATAAAAATGATAATCAAAAA < 1:2382297/38‑1 TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1990254‑1990175‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacataaaTACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG > AP009048/1990199‑1990264 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |