| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1990175 = | 57 (0.970) | 3 (0.060) | 3/82 | NT | 6.5% | intergenic (‑280/‑184) | yecJ/yecR | hypothetical protein/hypothetical protein |
| ? | AP009048 | 1990199 = | 41 (0.870) | intergenic (‑304/‑160) | yecJ/yecR | hypothetical protein/hypothetical protein | |||||
CCGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCC > AP009048/1990106‑1990240 | ccGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCtt > 1:3119773/1‑71 (MQ=255) cGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCttt < 1:5172044/71‑1 (MQ=255) cGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCttt < 1:4797919/71‑1 (MQ=255) cGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCtt < 1:3982162/70‑1 (MQ=255) cGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCtt > 1:1635712/1‑70 (MQ=255) catctgtaggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAt < 1:4670325‑M1/5‑1 (MQ=255) tctgtaggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAtgt < 1:451034‑M1/7‑1 (MQ=255) ctgtaggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAtgt < 1:900338‑M1/7‑1 (MQ=255) ctgtaggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAtgt < 1:3240398‑M1/7‑1 (MQ=255) ctgtaggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAtgt < 1:5160621‑M1/7‑1 (MQ=255) taggtgtcagaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTATGTGAt > 1:2047065‑M1/61‑70 (MQ=255) tataCAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCttt < 1:2308266/60‑1 (MQ=255) tataCAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCttt < 1:2038075/60‑1 (MQ=255) cAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATca < 1:2259901/71‑1 (MQ=255) agaaataggggggctgttttttgattatcatttttataacattaaaggggtaTTTAt < 1:4473701‑M1/5‑1 (MQ=255) aGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCt > 1:3317229/1‑53 (MQ=255) aGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGa < 1:2440623/61‑1 (MQ=255) tgtTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTAt > 1:4109039/1‑54 (MQ=255) ttATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATaaa < 1:1700331/71‑1 (MQ=255) aTTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAAt < 1:2842271/70‑1 (MQ=255) aTTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAAt < 1:803847/70‑1 (MQ=255) tGCGCTTATAATATGACAACCATCACAAAAATCAATCtt < 1:2211139/39‑1 (MQ=255) gcgcTTATAATATGACAACCATCACAAAAATCAAACTTTATGTGATACAAATCACATAAATACCCCTTTa < 1:794513/70‑1 (MQ=255) tttttgattatcatttttataacattaaaggggtattt < 1:1165320‑M1/3‑1 (MQ=255) tttttgattatcatttttataacattaaaggggtattt < 1:2382297‑M1/3‑1 (MQ=255) cgcTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAAt < 1:2403330/71‑1 (MQ=255) gcTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAAt < 1:2074757/70‑1 (MQ=255) gcTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATg < 1:482919/71‑1 (MQ=255) cTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGt > 1:1176436/1‑71 (MQ=255) cTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGt < 1:1833427/71‑1 (MQ=255) ttATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACAt > 1:663584/1‑53 (MQ=255) ttATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACAt > 1:2605066/1‑53 (MQ=255) ttATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGt > 1:1381815/1‑70 (MQ=255) ttATAATATGACAAACATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGt > 1:2358817/1‑70 (MQ=255) tataATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATa > 1:103647/1‑57 (MQ=255) ttatcatttttataacattaaaggggtaTTTATGTGATACAAATCACATa > 1:3527784‑M1/29‑50 (MQ=255) aataTGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAAt > 1:2531943/1‑53 (MQ=255) aataTGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTtata > 1:442278/1‑70 (MQ=255) aataTGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTta > 1:2218849/1‑68 (MQ=255) atatGACAACCATCACAAAAATCAATCTTTATGTGa < 1:1513589/36‑1 (MQ=255) atatGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATaa > 1:3009190/1‑70 (MQ=255) tcatttttataacattaaaggggtaTTTATGTGATACAAATcac > 1:3289930‑M1/26‑44 (MQ=255) tGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATaaaaa < 1:5172422/70‑1 (MQ=255) tGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAAt < 1:4886118/71‑1 (MQ=255) gACAACCATCACAATAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAAt < 1:512557/59‑1 (MQ=255) gACAACCATCACAAAAATCAATCTTTATGTGATACa < 1:1977492/36‑1 (MQ=255) tttttataacattaaaggggtaTTTATGTGATACAAATCACAt < 1:1969794‑M1/21‑1 (MQ=255) aCAACCATCACAAAAATCAATCTTTATGTGATTTGTATCACATa > 1:1007859/1‑44 (MQ=18) aCAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATaaa > 1:2332862/1‑46 (MQ=255) cAACCATCACAAAAATCAATCTTTATGTGATACaaa > 1:3314980/1‑36 (MQ=255) aaCCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATa < 1:5005775/71‑1 (MQ=255) ccATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATa > 1:1997823/1‑44 (MQ=255) ccATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAAt > 1:1720528/1‑71 (MQ=255) ccATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAAt > 1:4682595/1‑71 (MQ=255) cATCACAAAAATCAATCTTTATGTGATACAAATcaca > 1:1397307/1‑37 (MQ=255) aTCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATc > 1:2383526/1‑70 (MQ=255) aTCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCa < 1:2616311/71‑1 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTaa > 1:3512994/1‑50 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaa < 1:4348350/71‑1 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaa < 1:1812088/71‑1 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaa < 1:3563718/71‑1 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCa > 1:2814698/1‑70 (MQ=255) tCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCa > 1:1424911/1‑70 (MQ=255) cacaAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaa > 1:414065/1‑70 (MQ=255) acaAAAATCAATCTTTATGTGATACAAATCACATAAATa > 1:2171212/1‑39 (MQ=255) caAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaa > 1:1544382/1‑70 (MQ=255) caAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaa > 1:1406619/1‑70 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTa < 1:1350627/45‑1 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTa < 1:3147758/45‑1 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATaaaa < 1:3718217/56‑1 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaaaa < 1:455191/71‑1 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaaaa > 1:2717798/1‑71 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaaaa > 1:5260617/1‑71 (MQ=255) aaaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaaaa > 1:2040533/1‑71 (MQ=255) aaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAAc < 1:2884725/71‑1 (MQ=255) aaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAAc < 1:356175/71‑1 (MQ=255) aaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAAc < 1:938499/71‑1 (MQ=255) aaaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAAc < 1:944146/71‑1 (MQ=255) aaaTCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCaaaaaa > 1:5032184/1‑69 (MQ=255) caatcTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGccc > 1:1803324/1‑71 (MQ=255) | CCGACCATTTGTTATACAGGTGTTATTGTCTTTGCGCTTATAATATGACAACCATCACAAAAATCAATCTTTATGTGATACAAATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCC > AP009048/1990106‑1990240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |