New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 2172308 =NA (NA)73 (1.270) 48/100 NT 100% pseudogene (1563/2041 nt) gatR DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
?AP009048 = 3920279 0 (0.000)coding (88/213 nt) cspA major cold shock protein

Only 100 of 104 total aligned reads displayed.

GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2172377‑2172308
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC  <  AP009048/3920279‑3920211
                                                                                                                                           
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      >  1:3023976/1‑71
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                     <  1:4555967/71‑1
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      <  1:2721952/70‑1
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      <  1:2112972/70‑1
  CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG                                                                    >  1:4717893/1‑71
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGa                                                                   >  1:1880731/1‑70
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                   >  1:3134244/1‑71
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                   <  1:1966401/71‑1
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                   <  1:931981/71‑1
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                   >  1:881888/1‑71
    TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGat                                                                  <  1:5280590/71‑3
      TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                <  1:5179897/71‑1
        AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA                                                              >  1:3385595/1‑71
         GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC                                                             <  1:4057445/71‑1
           CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC                                                           >  1:1000694/1‑71
            ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACT                                                          >  1:3654279/1‑71
            ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                     >  1:470840/1‑60
             CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTT                                                         <  1:1429478/71‑1
              CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      <  1:1669716/57‑1
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT                                                     >  1:2980963/1‑71
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT                                                     >  1:660805/1‑71
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT                                                     >  1:4272444/1‑71
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT                                                     >  1:1062033/1‑71
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA                                                              >  1:4823283/1‑62
                   ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAGGATCAGTGTTCGTACA                                                            >  1:3773853/1‑62
                     TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                    >  1:1045923/1‑68
                      GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT                                                  <  1:1322036/69‑1
                       AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA                                                 <  1:446286/69‑1
                         AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC                                               >  1:30714/1‑69
                           TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAG                                            >  1:1262803/1‑70
                            TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                    <  1:5728/61‑1
                            TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                    >  1:4237714/1‑61
                             TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                         >  1:3884682/1‑71
                             TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      >  1:2565135/1‑42
                              ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG                                                                    >  1:4576990/1‑43
                              ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                     >  1:3546271/1‑42
                               CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG                                        <  1:267659/70‑1
                                TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTT                                                         <  1:1219070/52‑1
                                 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG                                     >  1:4205671/1‑71
                                  ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT                                      <  1:902074/69‑1
                                  ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT                                      <  1:895886/69‑1
                                  ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                      >  1:1313373/1‑37
                                   CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT                                   <  1:1438230/71‑1
                                    TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT                                      >  1:61369/1‑67
                                    TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                     <  1:4276926/36‑1
                                     TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA                                 >  1:1493013/1‑71
                                     TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC                                                           >  1:2118304/1‑45
                                     TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA                                                              >  1:1095565/1‑42
                                      AGCCGCGTGTCGACTATTGCTGGGTAAGATCAGTGTTCGTA                                                              >  1:247130/1‑41
                                      AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA                                       >  1:1996356/1‑64
                                       GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA                               <  1:3413717/71‑1
                                       GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG                                        <  1:1872088/62‑1
                                          GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT                            >  1:2830319/1‑71
                                           CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGT                                                               >  1:1603666/1‑35
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT                          >  1:1231498/1‑71
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT                          >  1:4871157/1‑71
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC                                               >  1:533155/1‑50
                                             TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTC                         >  1:3932991/1‑71
                                             TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA                                                 <  1:5093556/47‑1
                                              GTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT                        >  1:350227/1‑71
                                               TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                       >  1:1449516/1‑71
                                               TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                    >  1:3597045/1‑42
                                                CCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                       >  1:3828157/1‑70
                                                 CACTATTTCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG                                     >  1:28502/1‑55
                                                 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA                     >  1:1334955/1‑71
                                                 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC                                               >  1:2746385/1‑45
                                                  ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGAC                    >  1:3199277/1‑71
                                                   CTATTGCTTGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAA                             <  1:3091105/61‑1
                                                   CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                   <  1:2839687/71‑1
                                                   CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGCTTACAAATCTCTGGAC                    >  1:781732/1‑70
                                                    TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                   >  1:253862/1‑70
                                                    TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                   >  1:1093380/1‑70
                                                     ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                       <  1:956250/65‑1
                                                      TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG                >  1:3273485/1‑71
                                                      TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA                  <  1:1924794/69‑1
                                                      TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA                  <  1:4819878/69‑1
                                                      TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAA                                          >  1:634361/1‑45
                                                       TGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGG               >  1:4591208/1‑71
                                                       TGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA                  <  1:1557626/68‑1
                                                       TGCTGGGTAAGATCAGTGTTCGTACAATTCTCTGCTATCC                                              >  1:806906/1‑40
                                                        GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT              >  1:3560382/1‑71
                                                        GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                   <  1:4857914/66‑1
                                                         CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTC             <  1:2121089/71‑1
                                                         CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA                     >  1:538663/1‑63
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA          <  1:356147/71‑1
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG           >  1:4846211/1‑70
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG           >  1:4852385/1‑70
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG           >  1:1482669/1‑70
                                                               AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG       >  1:4945806/1‑71
                                                               AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA          >  1:4883667/1‑68
                                                                  ATCAGTGTTCGAACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGT    <  1:3712442/71‑1
                                                                   TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT                            <  1:1948574/46‑1
                                                                   TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG                                    <  1:893630/38‑1
                                                                    CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT      >  1:2227473/1‑67
                                                                    CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT      >  1:2233721/1‑67
                                                                    CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG       >  1:4595775/1‑66
                                                                    CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTAAGAAAGTGTCC  >  1:487796/1‑71
                                                                     AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTTGACGAAGG               <  1:5224796/57‑1
                                                                     AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                       >  1:2729979/1‑49
                                                                     AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT                        >  1:3266517/1‑48
                                                                                                                                           
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2172377‑2172308
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC  <  AP009048/3920279‑3920211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.