| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2172308 = | NA (NA) | 73 (1.270) | 48/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | AP009048 | = 3920279 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 216 total aligned reads displayed.
AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > AP009048/3920210‑3920348 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:956335‑M2/67‑70 (MQ=255)cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:1802033‑M2/67‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt < 1:1716109‑M2/6‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:4585795‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:3526818‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:322044‑M2/10‑4 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:2233721‑M2/1‑65 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgttggtaggatcACACATCTTTa < 1:4049435‑M2/11‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:4945806‑M2/1‑64 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:4595775‑M2/1‑64 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:863112‑M2/10‑1 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:4852385‑M2/1‑60 (MQ=255) gACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag < 1:2121089‑M2/71‑14 (MQ=255) atttgaaaacaataacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:262711‑M2/17‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:3491602‑M2/54‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:3560382‑M2/1‑57 (MQ=255) ccTTCGTCAAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:5224796‑M2/57‑2 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg > 1:5325210‑M2/52‑58 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:4819878‑M2/69‑17 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca < 1:1557626‑M2/68‑16 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2839687‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:253862‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1093380‑M2/1‑52 (MQ=255) gTCCAGAGATTTGTAAGCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:781732‑M2/1‑51 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagt > 1:3199277‑M2/1‑51 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:310303‑M2/5‑2 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1334955‑M2/1‑50 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc < 1:1957775‑M2/19‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:1449516‑M2/1‑48 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg < 1:725741‑M2/27‑1 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:3266517‑M2/1‑47 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca > 1:3932991‑M2/1‑46 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:4871157‑M2/1‑45 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:105902‑M2/12‑1 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:810580‑M2/31‑1 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccaagcaatag < 1:3091105‑M2/61‑20 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:4338457‑M2/21‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt > 1:3727846‑M2/38‑47 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:3413717‑M2/71‑32 (MQ=255) ttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:5053051‑M2/34‑70 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg < 1:3584869‑M2/20‑1 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccga < 1:4272189‑M2/39‑1 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:2599881‑M2/38‑1 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtg > 1:4205671‑M2/1‑34 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:895886‑M2/69‑37 (MQ=255) cctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:3311720‑M2/11‑1 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:267659‑M2/70‑40 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:634361‑M2/1‑29 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTa > 1:230550‑M2/25‑35 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:4570903‑M2/25‑59 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:4743838‑M2/25‑59 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:1262803‑M2/1‑27 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:3622634‑M2/28‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:2746385‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:2907801‑M2/33‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccga > 1:2827410‑M2/21‑59 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:3868871‑M2/21‑71 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccga < 1:2418172‑M2/39‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg < 1:305542‑M2/53‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:5093556‑M2/47‑26 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc < 1:1322036‑M2/69‑49 (MQ=255) ttacgtgggtatgatcACACATCTTTAGAGCCATCGTCAGGa > 1:4030595‑M2/17‑42 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1927216‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:3512328‑M2/55‑1 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:1045923‑M2/1‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa < 1:5728‑M2/61‑43 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:4237714‑M2/1‑19 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:660805‑M2/1‑18 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1062033‑M2/1‑18 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:2980963‑M2/1‑18 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:4447749‑M2/56‑1 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:3822407‑M2/14‑39 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc > 1:4387589‑M2/12‑70 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:1429478‑M2/71‑58 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtga < 1:1219070‑M2/52‑39 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg > 1:1000694‑M2/1‑12 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:1136182‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:5172405‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtt > 1:4474007‑M2/8‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact > 1:3385595‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtcgacacgcggct > 1:247130‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:2768280‑M2/6‑39 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt > 1:3703447‑M2/6‑70 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACg > 1:2002777‑M2/3‑70 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:4879676‑M2/37‑1 (MQ=255) atcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca < 1:5280590‑M2/69‑67 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:1880731‑M2/2‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:931981‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1966401‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:3134244‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:881888‑M2/1‑4 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatg > 1:4717893‑M2/1‑3 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:1083998/43‑1 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:5373341/1‑68 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:4845223‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaa < 1:4276926‑M2/36‑35 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:185413/1‑69 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:2721952‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:2112972‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:1669716‑M2/57‑57 (MQ=255) | AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > AP009048/3920210‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |