New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 2412225	NA (NA)	71 (1.210)	43/102	NT	88.8%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/predicted aminotransferase
	?	AP009048	= 3748805	9 (0.150)					coding (176/984 nt)	tnaB	tryptophan transporter of low affinity

AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2412156‑2412225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC  <  AP009048/3748805‑3748738                                                                                                                                            AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     >  1:3755641/1‑71  GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG                                                                    >  1:4468574/1‑71  GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:343875/70‑1  GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:4600739/70‑1   AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                   <  1:2061143/71‑1   AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCAACACCTGT                                                                   >  1:2469395/1‑71     ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:4323319/67‑1       AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT                                                                  >  1:4631453/1‑68        GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              <  1:3789230/71‑1         AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                 >  1:4901767/1‑67          AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                             <  1:1983418/70‑1          AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                 >  1:4673646/1‑66             CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC                                                         <  1:1183790/71‑1              ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC                                                         >  1:3489442/1‑70               CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACGTGTTATTAGAAGCAA                                                       <  1:3022386/71‑1               CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                             <  1:3451726/65‑1               CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:3507313/57‑1                TGGAGCACCTCAAAAACACCATCATAAACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA                                                           >  1:49173/1‑66                 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT                                                     >  1:5371967/1‑71                 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     >  1:669657/1‑55                 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     >  1:3196651/1‑55                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT                                                    <  1:1374721/71‑1                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA                                                      <  1:5279509/69‑1                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT                                                               <  1:5177433/60‑1                    GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                  <  1:852678/71‑1                    GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                  <  1:4572307/71‑1                    GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT                                                   >  1:2252888/1‑70                     CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                 <  1:2425437/71‑1                     CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                        <  1:4372928/64‑1                     CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:1575599/51‑1                       CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA                                                >  1:2785613/1‑70                       CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                 >  1:4122225/1‑53                       CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATAACCTGTTA                                                                 >  1:3833729/1‑53                        CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                               >  1:5337037/1‑70                        CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                 <  1:3416066/52‑1                         TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                             >  1:2660581/1‑71                         TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                             >  1:3093185/1‑71                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT                                            >  1:1863415/1‑71                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT                                            >  1:1257432/1‑71                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                 >  1:4414671/1‑66                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              >  1:4056456/1‑53                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              >  1:1392434/1‑53                          CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT                                                               >  1:317513/1‑52                           AAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                           >  1:4981359/1‑71                           AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                           >  1:97863/1‑71                           AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                           >  1:2079479/1‑71                           AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                             <  1:2814537/69‑1                           AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                  <  1:3297826/64‑1                            AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC                                          >  1:2068074/1‑71                            AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC                                          >  1:5140974/1‑71                            AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT                                                   <  1:1249167/62‑1                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         <  1:565800/71‑1                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         <  1:1165761/71‑1                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         <  1:463508/71‑1                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         >  1:2621592/1‑71                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              >  1:219827/1‑50                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              >  1:2015599/1‑50                             AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                              >  1:2725907/1‑50                              AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                        <  1:1147756/71‑1                               ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT                                                    >  1:4403462/1‑58                                CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC                                      <  1:4986911/71‑1                                CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                        <  1:4140202/53‑1                                   CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATAATC                                           >  1:2408327/1‑63                                     TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC                                 >  1:4331865/1‑71                                     TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                     <  1:2099822/35‑1                                       ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT                                                               >  1:2919219/1‑39                                         ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                 <  1:5358714/51‑1                                          CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                        >  1:5098768/1‑43                                          CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                        >  1:1320672/1‑43                                           ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTT                           >  1:3276821/1‑71                                            CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT                          <  1:595340/71‑1                                            CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT                          <  1:112991/71‑1                                               AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA                        >  1:3357067/1‑70                                               AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA                        >  1:468560/1‑70                                               AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA                        >  1:4893829/1‑70                                               AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA                                                >  1:2521856/1‑46                                                ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         >  1:2307594/1‑52                                                ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT                                              <  1:2051586/47‑1                                                ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT                                                   <  1:3765118/42‑1                                                 TCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACAC                     <  1:1616161/71‑1                                                  CAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTT                            >  1:2882442/1‑63                                                   AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACC                    <  1:3696750/70‑1                                                   AGTAAGTT‑GCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCA                   <  1:1334786/70‑1                                                           GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA             >  1:3051148/1‑69                                                           GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA             >  1:4156237/1‑69                                                               GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT       <  1:795127/71‑1                                                                CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGa                                       >  1:4126189/1‑37                                                                 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA     <  1:1912980/71‑1                                                                 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                         <  1:3561457/35‑1                                                                  TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAA    <  1:2156898/71‑1                                                                  TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA     >  1:4592070/1‑70                                                                  TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAT                  <  1:723396/57‑1                                                                  TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGT                                       <  1:193480/36‑1                                                                    ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC  >  1:3720222/1‑71                                                                    ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC  >  1:1274679/1‑71                                                                    ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC  >  1:2691434/1‑71                                                                                                                                            AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2412156‑2412225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC  <  AP009048/3748805‑3748738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.