| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2412225 | NA (NA) | 71 (1.210) | 43/102 | NT | 88.8% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 9 (0.150) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 105 total aligned reads displayed.
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > AP009048/2412159‑2412293 | aaCAGATGCCACTGGAGCACCTCAAAAACTCGATCATACACTAAATGAGTAAGTTGGCAGCATCACCaaaa < 1:5304789/71‑1 (MQ=11)aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:4556409/71‑1 (MQ=35) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:52290/71‑1 (MQ=38) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:3148682/1‑70 (MQ=37) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa > 1:524596/1‑69 (MQ=35) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg < 1:5270192/71‑1 (MQ=40) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg < 1:302550/70‑1 (MQ=255) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:1276219/71‑1 (MQ=255) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:4550429/71‑1 (MQ=255) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2733977/71‑1 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2275384/70‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:444056/1‑71 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:5047239/1‑71 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:4062929/64‑1 (MQ=39) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTgac < 1:4247653/71‑1 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca > 1:4485913/1‑70 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:1874216/1‑71 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:3509557/1‑71 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:2393077/1‑71 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:275145/1‑63 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:3746584/71‑1 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:4460838/58‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2721002/57‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:1589949/1‑70 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:1026434/1‑71 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc < 1:2415875/71‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:1033101/71‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg > 1:5088863/1‑71 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:3258505/50‑1 (MQ=40) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc < 1:4745540/69‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:3080565/1‑71 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa > 1:2591987/1‑51 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:911369/1‑52 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTc > 1:3694918/1‑67 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGAc > 1:2896034/1‑55 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt > 1:4208066/1‑62 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:1873543/1‑65 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt > 1:1412545/1‑64 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt < 1:4574737/70‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:1781129/71‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:635342/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:927102/67‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:933625/67‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:4904241/71‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtata < 1:299194/71‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:3745861/1‑70 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:4315911/1‑70 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc > 1:4938000/1‑71 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:3090377/52‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:5031188/52‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:4217774/1‑70 (MQ=255) catACACTAAATCAGTAAGTTTGAAGCATCACCaaaaaa > 1:1344540/1‑39 (MQ=17) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:5272784/1‑39 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:5332406/1‑67 (MQ=255) cTAAATCTGTAAGTTGGCAGCATCACCAAAAAAGCGAc < 1:487804/38‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:4477752/1‑48 (MQ=255) cTAAATCAGTAAGTT‑GCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc < 1:1153742/60‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:4920969/57‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:4478558/1‑70 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt > 1:3222242/1‑37 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAACGCGACTCACATTGTTCCg < 1:2951428/48‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:3532256/62‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:3952248/71‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:4014856/71‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:2780011/1‑71 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa < 1:1152515/70‑1 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:4553948/70‑1 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAat < 1:6409/71‑1 (MQ=255) aaGTTGGCAGCATCACCAAATAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:4053874/1‑70 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc < 1:2787891/51‑1 (MQ=255) gTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatat < 1:4380316/71‑1 (MQ=255) ggCAGCATCACCAAAATAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:2479174/51‑1 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:593297/1‑39 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:615279/39‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATaa < 1:57893/40‑1 (MQ=255) agcaTCACCAAAGAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 1:1967631/71‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa > 1:3778814/1‑47 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa > 1:2605153/1‑47 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca > 1:5361186/1‑55 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCa < 1:1897033/70‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa > 1:1270563/1‑49 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatat < 1:2865268/64‑1 (MQ=255) caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:2352710/1‑60 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg < 1:4871462/48‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:1927613/71‑1 (MQ=255) tCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:1141569/1‑71 (MQ=255) cACCAAAATAGCGACTCACATTGTTCCGTTATAATGCCTGAAGt < 1:2824253/44‑1 (MQ=255) cACCAAAAACGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:4125384/41‑1 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:3782022/1‑40 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa > 1:1850771/1‑47 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:3546882/1‑47 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa > 1:155274/1‑53 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg > 1:205218/1‑65 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 1:660304/65‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:4531651/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:2669961/1‑71 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:5340618/38‑1 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAat < 1:4724494/54‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg < 1:610192/43‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATc > 1:1827396/1‑46 (MQ=255) | AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > AP009048/2412159‑2412293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |