New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 289916728 (0.480)3 (0.060) 3/90 NT 10.8% intergenic (‑238/‑81) ygcW/yqcE predicted deoxygluconate dehydrogenase/predicted transporter
?AP009048 = 2899181 25 (0.480)intergenic (‑252/‑67) ygcW/yqcE predicted deoxygluconate dehydrogenase/predicted transporter

TAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2899092‑2899167
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attactTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA  <  AP009048/2899181‑2899113
                                                                                                                                                 
TAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAA                                                                            <  1:5309207/71‑1
TAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAA                                                                            >  1:2678006/1‑71
 AATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAAT                                                                           >  1:2028802/1‑71
    TTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTAC                                                                        >  1:471846/1‑71
     TTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTAC                                                                        >  1:4116084/1‑70
      TAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTAC                                                                        >  1:447881/1‑69
             CAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTTTTCTCAG                                                               >  1:510825/1‑71
                      GATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATT                                                                          <  1:298773/51‑1
                                ACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTAC                                                                        >  1:2331846/1‑43
                                  ACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTAC                                                                        <  1:783279/41‑1
                                        CCTCTGCTTTCCATGTTATTTATTATTTCAATTACTTTTCTCAGGTCTCTAGTAATT                                                  <  1:4638824/57‑1
                                                    ATGTTATTTATTATTTCAATTACTTTTCTCAGGTCTCTAGT                                                      <  1:3494344/41‑1
                                                                 TTTCAATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGA           <  1:4503533/71‑1
                                                                      ATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAA                                       <  1:3118470/38‑1
                                                                          CTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA  >  1:2889083/1‑71
                                                                          CTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA  >  1:1185262/1‑71
                                                                          CTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA  >  1:5321182/1‑71
                                                                          CTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC   <  1:2141190/70‑1
                                                                           TTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAG                        >  1:4604386/1‑48
                                                                                                                                                 
TAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2899092‑2899167
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attactTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA  <  AP009048/2899181‑2899113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.