| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2899167 | 28 (0.480) | 3 (0.060) | 3/90 | NT | 10.8% | intergenic (‑238/‑81) | ygcW/yqcE | predicted deoxygluconate dehydrogenase/predicted transporter |
| ? | AP009048 | = 2899181 | 25 (0.480) | intergenic (‑252/‑67) | ygcW/yqcE | predicted deoxygluconate dehydrogenase/predicted transporter | |||||
GTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATAT > AP009048/2899112‑2899249 | gTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGaaa < 1:3373287/70‑1 (MQ=255) tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAag > 1:1185262‑M2/1‑69 (MQ=255) tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAag > 1:5321182‑M2/1‑69 (MQ=255) tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAag > 1:2889083‑M2/1‑69 (MQ=255) gATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAag < 1:2141190‑M2/70‑3 (MQ=255) tcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAagtaattgaaa < 1:4503533‑M2/71‑12 (MQ=255) tcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCAcc > 1:3504588/1‑71 (MQ=255) tcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCAcc > 1:4941810/1‑71 (MQ=255) acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCt > 1:114448/1‑70 (MQ=255) acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCt < 1:3479327/70‑1 (MQ=255) acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGaa < 1:4190946/71‑1 (MQ=255) acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGa > 1:1174695/1‑70 (MQ=255) caacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGaaa < 1:612343/71‑1 (MQ=255) acacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAgg < 1:3956335/71‑1 (MQ=255) ccTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGggcg > 1:2590491/1‑71 (MQ=255) ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAa > 1:4604386‑M2/1‑47 (MQ=255) cTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCtt < 1:4008104/69‑1 (MQ=255) cTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTAc < 1:3844232/71‑1 (MQ=255) atttCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTAc > 1:3321745/2‑71 (MQ=255) tCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACtt < 1:4910361/70‑1 (MQ=255) tCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACtt < 1:3653139/70‑1 (MQ=255) tCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACtt < 1:1867202/70‑1 (MQ=255) tGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGG‑‑GGCTTACTTTTCTCtt > 1:4205624/1‑71 (MQ=255) gTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACATGAAAGGGCGGCTTACTTTTctct > 1:2869903/1‑71 (MQ=255) tttattATTTCAATTACTAGAGACCTGAGAAAagtaat < 1:3118470‑M2/38‑7 (MQ=255) tttattATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGACTTACTTTTCTCttttt < 1:4283565/71‑1 (MQ=255) ttattaTTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCt > 1:776644/1‑43 (MQ=255) tattatTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttt < 1:665766/70‑1 (MQ=255) ttCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTa > 1:375296/1‑71 (MQ=255) aaTTACTAGAGACCTGAGAAAagtaattgaaataataaataacatggaaagcagagg < 1:4638824‑M2/57‑37 (MQ=255) aCTAGAGACCTGAGAAAagtaattgaaataataaataacat < 1:3494344‑M2/41‑25 (MQ=255) cTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCTGCTTACTTTTCTCTTTTTTTTGTCTATTACAAAt < 1:1771251/71‑1 (MQ=255) cTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACaaa < 1:289878/70‑1 (MQ=255) tAGAGACCTGAGAAAAGTAATCCACCTGAAAGggcg > 1:840553/1‑36 (MQ=255) tAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCtt < 1:906844/40‑1 (MQ=255) aCCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAAt < 1:3542532/71‑1 (MQ=255) cTGAGAAAagtaattgaaataataaataacatggaaagcagaggtgttgtgtgagagtaatcacgcttctg > 1:510825‑M2/1‑8 (MQ=255) gagaAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGa > 1:3802566/1‑71 (MQ=255) aaaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGatat < 1:3097569/71‑1 (MQ=255) aaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATg < 1:22030/58‑1 (MQ=255) aaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGatat > 1:4318901/1‑69 (MQ=255) | GTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATAT > AP009048/2899112‑2899249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |