| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3064705 | 82 (1.400) | 4 (0.080) | 3/88 | NT | 5.5% | coding (1248/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase |
| ? | AP009048 | = 3064723 | 67 (1.330) | coding (1266/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase | |||||
CGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3064629‑3064705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < AP009048/3064723‑3064655 CGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTT > 1:3763048/1‑71 TTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGA < 1:5312802/68‑1 TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCAC < 1:2186108/70‑1 TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCA > 1:1805151/1‑69 TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCA > 1:3371725/1‑69 TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTG < 1:738702/65‑1 GTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGAT < 1:2691617/58‑1 TCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGAT > 1:4458913/1‑57 GCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGAT < 1:5128200/51‑1 AAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCA > 1:5352369/1‑50 AAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATC > 1:3808985/1‑49 AGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA < 1:4837859/71‑1 AAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTG < 1:3679178/37‑1 AGATCTCAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATG < 1:4685917/71‑1 GATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGAT > 1:1358881/1‑37 CCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCT < 1:1231982/42‑1 CCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCT < 1:3115257/42‑1 GATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTG < 1:4226369/59‑1 ATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTC < 1:5164268/71‑1 ATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTT < 1:4947463/70‑1 ATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCAC < 1:1337679/50‑1 ATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACA < 1:3968210/43‑1 TCACTTTGACGCTGTGTTCGCTGTGATCAACATGt < 1:3909202/35‑2 TCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTT > 1:4476395/1‑69 TCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGA > 1:5048924/1‑51 CACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTT > 1:3028738/1‑71 CACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCT > 1:3297511/1‑62 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < 1:4497947/71‑1 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < 1:1977680/71‑1 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < 1:4792123/71‑1 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTT < 1:2929059/70‑1 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCT > 1:3312451/1‑69 ACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTT < 1:2557800/54‑1 CTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < 1:199633/70‑1 CTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTT > 1:3349867/1‑69 CTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGAT > 1:279497/1‑58 CGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3064629‑3064705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTGCCTTCTTT < AP009048/3064723‑3064655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |