| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3064705 | 82 (1.400) | 4 (0.080) | 3/88 | NT | 5.5% | coding (1248/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase |
| ? | AP009048 | = 3064723 | 67 (1.330) | coding (1266/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase | |||||
Only 100 of 139 total aligned reads displayed.
TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCTTC > AP009048/3064636‑3064775 | aTGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATcaca < 1:4336039/70‑1 (MQ=255) gATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCg > 1:2906825/1‑71 (MQ=255) tGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTc > 1:2717899/1‑70 (MQ=255) gCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCa > 1:1661588/1‑70 (MQ=255) cTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATcaca > 1:929749/1‑54 (MQ=255) cTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGaa < 1:861987/59‑1 (MQ=255) cTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAacac < 1:4693161/62‑1 (MQ=255) cTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCaa < 1:1497893/70‑1 (MQ=255) cTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCaa < 1:4365265/70‑1 (MQ=255) cTAAAGAAGCCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCa > 1:924370/1‑69 (MQ=255) tAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAAcaca < 1:2247379/62‑1 (MQ=255) aaaGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt < 1:1977680‑M2/71‑3 (MQ=255) aaaGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt < 1:4792123‑M2/71‑3 (MQ=255) aaaGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt < 1:4497947‑M2/71‑3 (MQ=255) aaaGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAg < 1:199633‑M2/70‑2 (MQ=255) aagaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtg > 1:3028738‑M2/1‑68 (MQ=255) aagaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt < 1:2929059‑M2/70‑3 (MQ=255) agaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt > 1:3312451‑M2/1‑67 (MQ=255) gaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAaca > 1:2544956/1‑56 (MQ=255) gaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAaca > 1:3014518/1‑56 (MQ=255) gaagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtgat < 1:5164268‑M2/71‑6 (MQ=255) aagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtgat < 1:4947463‑M2/70‑6 (MQ=255) aagGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtga > 1:4476395‑M2/1‑65 (MQ=255) agGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACtttgacgctgtgttcgctgtgatca < 1:4837859‑M1/71‑26 (MQ=255) ggCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGatcat < 1:5268406/71‑1 (MQ=255) aaGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAc < 1:175354/71‑1 (MQ=255) aGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAcc > 1:3818771/1‑71 (MQ=255) aGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAcc > 1:1922913/1‑71 (MQ=255) aGATCTCAACCGTCGTGCCAATGTGCAGCCATGATGATCACtttgacgctgtgttcgctgtgatcaacatg < 1:4685917‑M1/71‑31 (MQ=255) gATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCa < 1:1416717/56‑1 (MQ=255) gATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGAtcatca > 1:1138746/1‑68 (MQ=255) gATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAcc > 1:2829454/1‑70 (MQ=255) aTCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAg > 1:279497‑M2/1‑57 (MQ=255) ctcAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGaa > 1:527828/1‑70 (MQ=255) ctcAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGaa > 1:3183613/1‑70 (MQ=255) cAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGc > 1:1302244/1‑47 (MQ=255) cAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtgatc < 1:4226369‑M2/59‑7 (MQ=255) cAACCGTCGTGCCAATGTGCAGACATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAAc > 1:168820/1‑69 (MQ=255) aaCCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgt < 1:2557800‑M2/54‑3 (MQ=255) aaCCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAg > 1:521125/1‑71 (MQ=255) aCCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAcc < 1:4424050/63‑1 (MQ=255) cgtcgtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGa < 1:4775462/71‑1 (MQ=255) gtcgtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAACGTCAAAGTGATCATCACCGAACAAGGGAt < 1:2213271/71‑1 (MQ=255) tcgtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtga > 1:5048924‑M2/1‑47 (MQ=255) gtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAgtgat < 1:1337679‑M2/50‑6 (MQ=255) gtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCAcc > 1:3158954/1‑57 (MQ=255) gtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGa > 1:3072908/1‑59 (MQ=255) gtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCg > 1:1234547/1‑70 (MQ=255) gtGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGc > 1:4137162/1‑71 (MQ=255) tGCCAATGTGCAGCCATGTTGATCACAGCGAATACAGCGTCAAAGTGATCATCAc > 1:654837/1‑55 (MQ=255) tGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCa < 1:3615107/42‑1 (MQ=255) ccAATGTGCAGCCATGTTGATCACtttgacgctgtgttcgct < 1:3115257‑M1/42‑19 (MQ=255) ccAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCg < 1:356893/70‑1 (MQ=255) ccAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCg < 1:3599868/70‑1 (MQ=255) ccAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGa > 1:268868/1‑71 (MQ=255) ccAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGa > 1:5272579/1‑71 (MQ=255) aaTGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATc > 1:2243122/1‑71 (MQ=255) aaTGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATc < 1:4178302/71‑1 (MQ=255) aTGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATc > 1:4049870/1‑70 (MQ=255) aTGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCt < 1:3936677/71‑1 (MQ=255) aTGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCt > 1:5087469/1‑71 (MQ=255) tgtgCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAAc > 1:4654082/1‑54 (MQ=255) tgCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGatcat > 1:756221/1‑44 (MQ=255) cAGCCATGTTGATCTCAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGcgcg < 1:5363700/71‑1 (MQ=255) cAGCCATGTTGATCACAGCGAACACAGC‑TCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCgg > 1:357361/1‑71 (MQ=255) gCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGt < 1:4096874/71‑1 (MQ=255) ccATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTc > 1:3136498/1‑71 (MQ=255) aTGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGa < 1:2092139/43‑1 (MQ=255) aTGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCg > 1:2844878/1‑54 (MQ=255) aTGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCTCCGATCTGCGCGGTCtt < 1:3064676/71‑1 (MQ=255) aTGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCtt > 1:4158484/1‑71 (MQ=255) tGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGt > 1:1305583/1‑67 (MQ=255) tGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGt > 1:2962510/1‑67 (MQ=255) tGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCttt < 1:3389926/71‑1 (MQ=255) tGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCttt < 1:4001292/71‑1 (MQ=255) gTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTc > 1:1044306/1‑71 (MQ=255) ttGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTc < 1:581041/70‑1 (MQ=255) ttGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTc < 1:460804/70‑1 (MQ=255) tGATCACAGCGAACACAGCGTCAAAgtgatcaacatggctgcacattggcacgacggttgagatcttgcct < 1:4837859‑M2/71‑47 (MQ=255) gATCACtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttg < 1:4226369‑M1/59‑54 (MQ=255) gATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGAt > 1:3721248/1‑47 (MQ=255) gATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCt > 1:2789801/1‑65 (MQ=255) aTCACtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgcctt < 1:4947463‑M1/70‑66 (MQ=255) aTCACtttgacgctgtgttcgctgtgatcaacatggctgcaca < 1:3968210‑M1/43‑39 (MQ=255) tCACtttgacgctgtgttcgctgtgatcaacatgt < 1:3909202‑M1/35‑32 (MQ=255) tCACtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgcctt > 1:4476395‑M1/1‑4 (MQ=255) tCACtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacga > 1:5048924‑M1/1‑4 (MQ=255) cacaGCGAACACAGCGTCAAAGTGATTATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCt > 1:4736520/1‑71 (MQ=255) cacaGCGAACACAGCGTCAAAGTGATCATCACCGAAc < 1:2081707/37‑1 (MQ=255) cACtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatct > 1:3297511‑M1/1‑3 (MQ=255) acaGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCtt < 1:3395467/71‑1 (MQ=255) aCtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgccttcttt < 1:4497947‑M1/71‑70 (MQ=255) aCtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgccttctt < 1:2929059‑M1/70‑69 (MQ=255) aCtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgccttct > 1:3312451‑M1/1‑2 (MQ=255) aCtttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggtt < 1:2557800‑M1/54‑53 (MQ=255) ctttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgccttcttt < 1:199633‑M1/70‑70 (MQ=255) ctttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagatcttgccttctt > 1:3349867‑M1/1‑1 (MQ=255) ctttgacgctgtgttcgctgtgatcaacatggctgcacattggcacgacggttgagat > 1:279497‑M1/1‑1 (MQ=255) caGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCTTc < 1:3813712/71‑1 (MQ=255) caGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCTTc < 1:1226292/71‑1 (MQ=255) | TATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACAGCGAACACAGCGTCAAAGTGATCATCACCGAACAAGGGATCGCCGATCTGCGCGGTCTTTCCCCGCTTC > AP009048/3064636‑3064775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |