New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 3167346 =66 (1.130)3 (0.060) 3/90 NT 5.0% intergenic (‑146/+59) ygiU/ygiV predicted cyanide hydratase/predicted transcriptional regulator
?AP009048 3167365 = 55 (1.060)intergenic (‑165/+40) ygiU/ygiV predicted cyanide hydratase/predicted transcriptional regulator

ATGTGCCGTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3167421‑3167346
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTC  >  AP009048/3167365‑3167434
                                                                                                                                                  
ATGTGCCGTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATG                                                                             >  1:730154/1‑71
   TGCCTTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGC                                                                          >  1:1244310/1‑71
   TGCCGTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGC                                                                          <  1:1920483/71‑1
       GTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGC                                                                          >  1:2056794/1‑67
                ATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGC                                                                          <  1:409114/58‑1
                                                    CAAACTGGCGCTACTAATGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCA                             >  1:3400709/1‑67
                                                        CTGGCGCTACTAATGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAG                                   <  1:998656/57‑1
                                                          GGCGCTACTAATGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGC                                 >  1:2735770/1‑57
                                                                      GCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCA                                >  1:4922370/1‑46
                                                                      GCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTG                                          <  1:3817209/36‑1
                                                                        GCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGT     >  1:358222/1‑71
                                                                        GCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGT     <  1:5355766/71‑1
                                                                        GCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGA                                        >  1:4674117/1‑36
                                                                         CCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTT    <  1:2293700/71‑1
                                                                         CCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTT    <  1:1207500/71‑1
                                                                          CAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTT   <  1:3097446/71‑1
                                                                          CAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTT   <  1:3700323/71‑1
                                                                           AGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTC  <  1:341665/71‑1
                                                                           AGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAA                       >  1:475778/1‑50
                                                                                                                                                  
ATGTGCCGTTGGCGTGATGCCTGACTCCAGCTTCCCTTATAAATTCCTGCTTCAAACTGGCGCTACTAATGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3167421‑3167346
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTC  >  AP009048/3167365‑3167434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.