New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	3491066 =	55 (0.940)	4 (0.070)	3/94	NT	6.8%	coding (1621/2298 nt)	pflD	predicted formate acetyltransferase 2
	?	AP009048	3491086 =	59 (1.090)					coding (1601/2298 nt)	pflD	predicted formate acetyltransferase 2

TTATAACTTCTCCGGCGTACAGGGGATCGGTATCGCCAACCTGAGCGATTCTCTCCATGCGTTGAAAGGGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3491139‑3491066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGT  >  AP009048/3491086‑3491134                                                                                                                             TTATAACTTCTCCGGCGTACAGGGGATCGGTATCGCCAACCTGAGCGATTCTCTCCATGCGTTGAAAGGGA                                                      >  1:5281362/1‑71   ATAACTTCTCCGGCGTACAGGGGATCGGTATCGCCAACCTGAGCGATTCTCTCCATGCGTTGAAAGGGAT                                                     <  1:1879513/70‑1    TAACTTCTCCGGCGTACAGGGGATCGGTATCGCCAACCTGAGCGATTCTCTCCATGCGTTGAAAGGGATG                                                    >  1:2696105/1‑70                                                  TCTCTCCATGCGTTGAAAGGGATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTG                <  1:673262/60‑1                                                     CTCCATGCGTTGAAAGGGATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGT  >  1:2418900/1‑71                                                     CTCCATGCGTTGAAAGGGATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAG   >  1:2425340/1‑70                                                               TGAAAGGGATGGAGAGAATCGCTCAGGTTGGCGATACCGATCC                    <  1:4155416/43‑1                                                                                                                             TTATAACTTCTCCGGCGTACAGGGGATCGGTATCGCCAACCTGAGCGATTCTCTCCATGCGTTGAAAGGGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3491139‑3491066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGT  >  AP009048/3491086‑3491134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.