| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3491066 = | 55 (0.940) | 4 (0.070) | 3/94 | NT | 6.8% | coding (1621/2298 nt) | pflD | predicted formate acetyltransferase 2 |
| ? | AP009048 | 3491086 = | 59 (1.090) | coding (1601/2298 nt) | pflD | predicted formate acetyltransferase 2 | |||||
GCGTTGCGAAGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGT > AP009048/3491000‑3491134 | gCGTTGCGAAGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATc > 1:2917475/1‑71 (MQ=255) cGTTGCGAAGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATcc < 1:4166318/71‑1 (MQ=255) gCGAAGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAAACATCCCttt > 1:3868450/1‑71 (MQ=255) aGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCa > 1:4556574/1‑60 (MQ=255) aGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAAc > 1:68284/1‑71 (MQ=255) aGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAAc > 1:530103/1‑71 (MQ=255) aGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCT‑AAAAACCATCCCTTTCAACg > 1:3931186/1‑71 (MQ=255) ttGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGc < 1:2837421/71‑1 (MQ=255) ggCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAAc < 1:4897479/54‑1 (MQ=255) ggCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCa < 1:841748/70‑1 (MQ=255) tttAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATg > 1:2928805/1‑68 (MQ=255) tttAATACCGACAGCAATTCGACAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATg > 1:2987708/1‑68 (MQ=255) acttctccggcgtacaggggatcggtatcgccaacctgagcgattctctCCATCCCTTTCAACGCATGgag > 1:2418900‑M1/50‑71 (MQ=255) ttAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATcc > 1:5112742/1‑54 (MQ=255) ttAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCa > 1:3176258/1‑65 (MQ=255) ttAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGgag < 1:2566734/70‑1 (MQ=255) cttctccggcgtacaggggatcggtatcgccaacctgagcgattctctCCATCCCTTTCAACGCATGgag > 1:2425340‑M1/49‑70 (MQ=255) tAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGga > 1:3353019/1‑68 (MQ=255) aaTACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAAc < 1:2042756/47‑1 (MQ=255) aaTACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAAc < 1:5277894/47‑1 (MQ=255) aCCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATc > 1:4032644/1‑71 (MQ=255) ccGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCAt > 1:283649/1‑46 (MQ=255) ccGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCg > 1:4988934/1‑71 (MQ=255) cAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCt > 1:3197400/1‑69 (MQ=255) caggggatcggtatcgccaacctgagcgattctctCCATCCCTTTCAACGCATGgagaga < 1:673262‑M1/25‑1 (MQ=255) aaTTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCg < 1:37486/63‑1 (MQ=255) aaTTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGtt < 1:2707099/71‑1 (MQ=255) aTTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTg < 1:1467316/71‑1 (MQ=255) tCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTc < 1:1986516/42‑1 (MQ=255) tCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCaa > 1:4543383/1‑44 (MQ=255) tCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAg > 1:1429326/1‑65 (MQ=255) ggatcggtatcgccaacctgagcgattctctCCATCCCTTTCa < 1:4155416‑M1/12‑1 (MQ=255) cGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGc < 1:2937275/70‑1 (MQ=255) cGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGc > 1:3907151/1‑70 (MQ=255) gTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGa < 1:2992677/71‑1 (MQ=255) tCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:2648933/71‑1 (MQ=255) tCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:1560714/71‑1 (MQ=255) tCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:2784789/71‑1 (MQ=255) tCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:3944876/71‑1 (MQ=255) tCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACCCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:2006900/71‑1 (MQ=255) aaaaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAgg > 1:4311823/1‑61 (MQ=255) aaaaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTg < 1:2009798/64‑1 (MQ=255) aaaaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGAt < 1:4192197/69‑1 (MQ=255) aaaaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATAc > 1:5033280/1‑71 (MQ=255) aaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAgg > 1:3697431/1‑59 (MQ=255) aaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAgg > 1:1845074/1‑59 (MQ=255) aaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAgg > 1:1851184/1‑59 (MQ=255) aaCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCg < 1:4683576/71‑1 (MQ=255) aCTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGa < 1:468145/71‑1 (MQ=255) ttAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATa < 1:3203364/65‑1 (MQ=255) aaaCGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCt < 1:2821644/50‑1 (MQ=255) aaaCGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATccc > 1:2483789/1‑71 (MQ=255) aaCGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATccc < 1:573556/70‑1 (MQ=255) aCGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCt > 1:3972762/1‑71 (MQ=255) gCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTg > 1:270113/1‑53 (MQ=255) tGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCg < 1:2323499/42‑1 (MQ=255) tGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCg < 1:5125114/42‑1 (MQ=255) tGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTg < 1:4385040/68‑1 (MQ=255) ttGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGc < 1:3697606/51‑1 (MQ=255) ttGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGa < 1:2655634/59‑1 (MQ=255) gCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGa > 1:739298/1‑51 (MQ=255) gCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCg > 1:2034967/1‑71 (MQ=255) cTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATcccc > 1:2050807/1‑61 (MQ=255) cTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCg < 1:3074948/70‑1 (MQ=255) tCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGa < 1:3838618/49‑1 (MQ=255) aaaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGc < 1:307387/45‑1 (MQ=255) aaaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTAc > 1:561233/1‑63 (MQ=255) aaaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGgag > 1:4673992/1‑70 (MQ=255) aaaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGgag > 1:4199828/1‑70 (MQ=255) aaaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCACTGTACGCCGgag < 1:4312691/70‑1 (MQ=255) aaaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGgag > 1:2511971/1‑69 (MQ=255) aaaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAg > 1:3169836/1‑71 (MQ=255) aaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGtt < 1:3261087/39‑1 (MQ=255) aaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCg < 1:4260143/43‑1 (MQ=255) aaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGt < 1:3869737/71‑1 (MQ=255) aaCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGt > 1:3564556/1‑71 (MQ=255) aCCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTg > 1:4146805/1‑39 (MQ=255) | GCGTTGCGAAGTTGGCTTTTAATACCGACAGCAATTCGTCAAAACTTAAACGCTGTTGCTCAAAAACCATCCCTTTCAACGCATGGAGAGAATCGCTCAGGTTGGCGATACCGATCCCCTGTACGCCGGAGAAGT > AP009048/3491000‑3491134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |