| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3574516 | 58 (0.990) | 5 (0.100) | 5/90 | NT | 8.3% | intergenic (‑82/+20) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase |
| ? | AP009048 | = 3574523 | 60 (1.160) | intergenic (‑89/+13) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase | |||||
CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3574442‑3574516‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaactCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA < AP009048/3574523‑3574455 CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT < 1:2805677/71‑1CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT > 1:1113025/1‑70CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT > 1:3392961/1‑70 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA < 1:930765/71‑1 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA < 1:4542008/71‑1 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT > 1:4253076/1‑70 TAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA > 1:5331646/1‑71 TAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGCTTTATTAA > 1:4243793/1‑71 AAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAAC > 1:4461723/1‑71 AAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCAACCATTCATATGGAATGGTTTTATTAAC > 1:4899088/1‑71 AGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT > 1:5276768/1‑71 AGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT < 1:4581350/71‑1 TTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT > 1:4824250/1‑61 TAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACTCATACG > 1:2653689/1‑68 TAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT > 1:1419708/1‑57 AAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA > 1:2978755/1‑59 AAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA > 1:318877/1‑58 AATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACTCATACGCAGTTA < 1:4514511/71‑1 TTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT < 1:1427490/45‑1 TTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA > 1:3414700/1‑47 GCAATAAGATACCGACCATTCATATTGAATGGTTTTATTAACTCATACGCAGTTAAT < 1:3434586/57‑1 TTCATATGGAATGGTTTTTTTAACTCATACGCAGTTAAT > 1:4249595/1‑39 CATAT‑GAATGGTTTTATTAACTCATACGCAGTTAA < 1:1983161/35‑1 TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGA < 1:4358117/70‑1 TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAG > 1:601356/1‑67 TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTA > 1:2912592/1‑47 ACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTT < 1:774956/71‑1 CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA < 1:1613970/71‑1 TCATACGCAGTTAATAAAACCATTCCATATGAATGGTC < 1:304129/38‑1 CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3574442‑3574516‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaactCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA < AP009048/3574523‑3574455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |