| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4547465 | 51 (0.870) | 3 (0.060) | 3/90 | NT | 6.2% | intergenic (+152/‑330) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547479 | 45 (0.870) | intergenic (+166/‑316) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4547391‑4547465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaattaATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGC < AP009048/4547479‑4547411 AGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAA < 1:1802769/71‑1 TTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTA > 1:1872306/1‑64 AAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATT < 1:5177254/56‑1 AAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTA > 1:2939205/1‑49 ATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAA < 1:3643425/44‑1 TATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAATTTACAATAGAAAT > 1:2155879/1‑61 AAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATT < 1:34753/41‑1 CGACAAAAAGCATCTAACTGTTTGATATGTAAATTAATTTACAATAGAAATAATTTAC > 1:4992172/1‑58 AAAGCATCTAACTGTTTGATATGTAAATTAATTTACAATAGAAATAATT > 1:1580588/1‑49 AAATTAATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCG > 1:1537999/1‑56 AAATTAATTTACAATAGAAATAATTTACATATCAAACAGTTAGAT > 1:2459604/1‑45 AATTAATTTACAGTAGAAATAATTTACATATCAAACAGTTAGATG > 1:658777/1‑45 ATTAATTTACAATAGAAATAATTTACATATCAAACAGTTA > 1:3776303/1‑40 TTAATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATG < 1:490449/71‑1 TTAATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTT > 1:4883532/1‑46 TAATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGC > 1:265565/1‑71 AATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGC < 1:2747869/70‑1 AATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTT < 1:795013/56‑1 AATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGT > 1:4102539/1‑52 AGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4547391‑4547465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaattaATTTACAATAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGC < AP009048/4547479‑4547411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |