| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1736969 = | 61 (1.040) | 3 (0.070) | 3/80 | NT | 6.5% | intergenic (+5/‑123) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe |
| ? | AP009048 | 1736997 = | 38 (0.830) | intergenic (+33/‑95) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe | |||||
AAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCC > AP009048/1736900‑1737036 | aaGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACttt < 1:12002/71‑1 (MQ=255)aaGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACtt > 1:4328992/1‑70 (MQ=255)aaGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACtt < 1:755749/70‑1 (MQ=255) gACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAc > 1:2052402/1‑71 (MQ=255) gACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAc > 1:2386601/1‑71 (MQ=255) actactGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACttt < 1:3843568/68‑1 (MQ=255) acgtacaatagccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTAcc < 1:1697289‑M1/5‑1 (MQ=255) cgtacaatagccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTAccc < 1:537272‑M1/6‑1 (MQ=255) cgtacaatagccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTAccc < 1:5161005‑M1/6‑1 (MQ=255) tactGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCt > 1:2439936/1‑71 (MQ=255) tacaatagccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTACCCtg < 1:4955592‑M1/8‑1 (MQ=255) ctGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtg < 1:284570/70‑1 (MQ=255) acaatagccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTACCCtgt < 1:1401689‑M1/9‑1 (MQ=255) gCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtgt < 1:5158981/68‑1 (MQ=255) gcgcCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTAc < 1:5154133/71‑1 (MQ=255) gccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTACCCtgttg < 1:1497085‑M1/11‑1 (MQ=255) gccttattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTACCCtg < 1:471576‑M1/8‑1 (MQ=255) cgcCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACg > 1:4098596/1‑71 (MQ=255) cgcCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACg > 1:4479325/1‑71 (MQ=255) gcCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACgg > 1:2470852/1‑71 (MQ=255) ccACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACgg > 1:1423749/1‑70 (MQ=255) ccACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGc < 1:2644342/71‑1 (MQ=255) tattgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTAcc < 1:3690613‑M1/5‑1 (MQ=255) cACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACtt < 1:2105514/53‑1 (MQ=255) ttgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaact > 1:3751062‑M1/51‑51 (MQ=255) ttgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTa < 1:3113855‑M1/3‑1 (MQ=255) ttgtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTa < 1:2317448‑M1/3‑1 (MQ=255) cTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACttt < 1:3545973/52‑1 (MQ=255) tATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCaa > 1:4345965/1‑69 (MQ=255) tATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAACCtgttgt > 1:261642/1‑61 (MQ=255) gtgcgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTACCCTGTTGTTACGGCAACa > 1:3659016‑M1/49‑70 (MQ=255) tGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtgttgt < 1:1905175/59‑1 (MQ=255) tGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtg < 1:4338626/55‑1 (MQ=255) tGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAgg > 1:5273384/1‑71 (MQ=255) ttGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAc < 1:1972492/49‑1 (MQ=255) ttGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAc < 1:1962589/49‑1 (MQ=255) cgtatggatagggtagcaaattaaaaggtgagacaaaagatgaacTTAc < 1:1013278‑M1/4‑1 (MQ=255) cgcTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtgttg < 1:4888598/52‑1 (MQ=255) cgcTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGt < 1:2446017/71‑1 (MQ=255) cTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGtt > 1:1159442/1‑70 (MQ=255) cgtcgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtgt > 1:4287101/1‑46 (MQ=255) cgtcgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGt < 1:187270/63‑1 (MQ=255) gtcgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCacc > 1:462337/1‑69 (MQ=255) gtcgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATc > 1:2120508/1‑71 (MQ=255) gggtagcaaattaaaaggtgagacaaaagatgaacTTACCCtgttg < 1:3145022‑M1/11‑1 (MQ=255) gggTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtg < 1:774571/41‑1 (MQ=255) gggTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTa > 1:1553849/1‑47 (MQ=255) gggTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCtt < 1:2035137/70‑1 (MQ=255) gggTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTAAGGCAACAGGGTAAGTTCATCttt < 1:242861/71‑1 (MQ=255) ggTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCtttt < 1:1437764/71‑1 (MQ=255) aaTGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGtc > 1:3369050/1‑71 (MQ=255) aaTGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGtc > 1:2800776/1‑71 (MQ=255) aTGACCCCAAAAACACTTCGCTAAAACTTTACCCtgtt > 1:2055346/1‑38 (MQ=255) aTGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGtct < 1:5151946/71‑1 (MQ=255) aTGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGtc < 1:1319459/70‑1 (MQ=255) aattaaaaggtgagacaaaagatgaacTTACCCTGTTGTTACGGCAACa < 1:5228616‑M1/22‑1 (MQ=255) gACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGtt > 1:1768499/1‑57 (MQ=255) gACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCtttt > 1:5074341/1‑65 (MQ=255) gACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGtc > 1:1708319/1‑68 (MQ=255) aCCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCAc > 1:2766504/1‑71 (MQ=255) aCCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCAc < 1:4126597/71‑1 (MQ=255) ccccAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGc < 1:3267527/42‑1 (MQ=255) cAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt > 1:3345306/1‑71 (MQ=255) cAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt > 1:128221/1‑71 (MQ=255) cAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt > 1:1753913/1‑71 (MQ=255) cAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTATCACCttt > 1:1511722/1‑71 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCa > 1:1264413/1‑65 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCtttt < 1:1655728/71‑1 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCtttt < 1:3045307/71‑1 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt > 1:2996629/1‑70 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt > 1:4069533/1‑70 (MQ=255) aaaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGAAACAGGGTAAGTTCATCTTTTGtctc > 1:1920341/1‑64 (MQ=255) aaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCtttt > 1:5057630/1‑70 (MQ=255) aaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCtttt > 1:5236178/1‑70 (MQ=255) aaaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTa < 1:4903906/71‑1 (MQ=255) aaaCACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTtata > 1:3510362/1‑70 (MQ=255) tgagacaaaagatgaacTTACCCTGTTGTTACGGCa > 1:2162059‑M1/18‑36 (MQ=255) acacTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAAtt > 1:5305439/1‑71 (MQ=255) acacTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAAt < 1:3871460/70‑1 (MQ=255) ttCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGc > 1:3144727/1‑70 (MQ=255) cGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTAc > 1:1779231/1‑71 (MQ=255) cGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTAc > 1:2567259/1‑71 (MQ=255) cGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTAc > 1:5311420/1‑71 (MQ=255) gCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAAttt > 1:2839103/1‑65 (MQ=255) gCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAAtt > 1:2636499/1‑64 (MQ=255) aaaaCTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTa < 1:4643102/58‑1 (MQ=255) aaaaCTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTa > 1:1336153/1‑71 (MQ=255) cTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATcc > 1:3354173/1‑70 (MQ=255) cTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATcc > 1:2790267/1‑70 (MQ=255) TTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAAt > 1:3515634‑M1/1‑54 (MQ=255) | AAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCC > AP009048/1736900‑1737036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |