| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2214850 | 49 (0.840) | 3 (0.050) | 3/96 | NT | 5.7% | coding (292/462 nt) | yehR | conserved hypothetical protein |
| ? | AP009048 | = 2214884 | 53 (0.960) | coding (326/462 nt) | yehR | conserved hypothetical protein | |||||
CCAAGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTGCAGGGTA > AP009048/2214782‑2214919 | ccAAGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATAcc > 1:582357/1‑71 (MQ=255)ccAAGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATAc < 1:2338690/70‑1 (MQ=255) cAAGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATA < 1:3132527‑M1/68‑1 (MQ=255) aaGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGa > 1:1785553/1‑71 (MQ=255) ttGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGAt > 1:1812738/1‑65 (MQ=255) gAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTAcgc > 1:4739457/1‑71 (MQ=255) cGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAATAATTAACCTATACCGATACCTACGCGCAg < 1:2270705/71‑1 (MQ=255) gTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAg > 1:249252/1‑70 (MQ=255) tAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAg > 1:4838729/1‑68 (MQ=255) aaGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATAc > 1:3572395/1‑57 (MQ=255) aGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGaaa < 1:1493339/70‑1 (MQ=255) cgcCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGaa < 1:4209403/67‑1 (MQ=255) gcCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGt < 1:3579320/71‑1 (MQ=255) ccAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCa > 1:5200553/1‑61 (MQ=255) cAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGaa < 1:2031495/64‑1 (MQ=255) cAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGa < 1:927184/71‑1 (MQ=255) aaaTACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCa > 1:5305052/1‑59 (MQ=255) aaTACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGaaaa > 1:3029680/1‑64 (MQ=255) aaTACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGAc > 1:1735465/1‑70 (MQ=255) aaTACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGAc > 1:833794/1‑70 (MQ=255) aaTACAAAAACATCGCGGGTGTCGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGAc > 1:4917668/1‑70 (MQ=255) aTACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTa > 1:1908810/1‑71 (MQ=255) aCAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGt > 1:1668052/1‑64 (MQ=255) aCAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGt > 1:3965249/1‑64 (MQ=255) aCAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATc > 1:2522196/1‑71 (MQ=255) aaaaCATCGCGGGTGTTGAAGAAAAATTAACCTATAtcgatagtcacgttttcctgcgcgt < 1:3864884‑M1/61‑26 (MQ=255) aaaaCATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGa > 1:3044703/1‑70 (MQ=255) aaaCATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAta < 1:3278501‑M2/71‑3 (MQ=255) aaaCATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAta > 1:3691559‑M2/1‑69 (MQ=255) aaaCATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAta < 1:1649022‑M2/71‑3 (MQ=255) aCATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAt < 1:1308592‑M2/68‑2 (MQ=255) cATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAtat < 1:4396794‑M2/69‑4 (MQ=255) aTCGCGGGTGTTGAAGAAAAATTAACCTATAtcgatagtcacgttttc < 1:4247205‑M1/48‑18 (MQ=255) aTCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACg > 1:4249990/1‑55 (MQ=255) gcgGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGaaa < 1:1430439/70‑1 (MQ=255) cgGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGaaaa < 1:2144773/70‑1 (MQ=255) tgtTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGa < 1:2646785/63‑1 (MQ=255) gtTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGt < 1:5352226/47‑1 (MQ=255) ttGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTg < 1:1845296/68‑1 (MQ=255) ttGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGa < 1:769727/70‑1 (MQ=255) gaagaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGAt > 1:5219208‑M2/1‑53 (MQ=255) aagaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGt < 1:2342053/43‑1 (MQ=255) aagaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGAttt < 1:1280371/70‑1 (MQ=255) aagaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGAttt < 1:3310618/70‑1 (MQ=255) aagaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGAttt < 1:4008044/70‑1 (MQ=255) aagaaAAATTAACCGATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGAttt > 1:4998973/1‑70 (MQ=255) agaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATc < 1:4005391/49‑1 (MQ=255) agaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATc < 1:1467111/49‑1 (MQ=255) gaaAAATTAACCTATAtcgatagtcacgttttcctgc < 1:4258657‑M1/37‑22 (MQ=255) gaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGa < 1:2919817/50‑1 (MQ=255) gaaAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTa > 1:3824241/1‑70 (MQ=255) aaaaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTa > 1:4970776/1‑45 (MQ=255) aaaaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTa > 1:1494269/1‑69 (MQ=255) aaaaTTAATCTATACCGATAACTACGCGCAGGAAAACGTGACTATCGATATGGaaa < 1:4540974/56‑1 (MQ=255) aaaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTg > 1:2657383/1‑61 (MQ=255) aaaTTAACCTATACCGATACCTACGCGCAGGAAAAc < 1:3398303/36‑1 (MQ=255) aaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGaaaaa < 1:4146454/57‑1 (MQ=255) aaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTg > 1:3944032/1‑60 (MQ=255) aaaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGc > 1:1082367/1‑71 (MQ=255) aaaTTAACCTATACCGATACCTACGCCCAGGAAAACGTGACTATCGAta < 1:4833084‑M2/49‑3 (MQ=255) aaTTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGcc < 1:2726759/71‑1 (MQ=255) aaCCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTg < 1:5013654/70‑1 (MQ=255) aaCCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTg < 1:996812/70‑1 (MQ=255) aCCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTGc < 1:4440456/70‑1 (MQ=255) tataCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTaa < 1:1264116/59‑1 (MQ=255) atatcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttcaacacccgcgatg < 1:4396794‑M1/69‑67 (MQ=255) ataCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTaa < 1:3019201/58‑1 (MQ=255) ataCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTaa < 1:294551/58‑1 (MQ=255) tatcgatagtcacgttttcctgggcgtaggtatcggtataggttaattt < 1:4833084‑M1/49‑48 (MQ=255) tatcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttcaacacccgcgatgttt > 1:3691559‑M1/1‑2 (MQ=255) tatcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttcaacacccgcgatgttt < 1:3278501‑M1/71‑70 (MQ=255) tatcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttcaacacccgcgatgttt < 1:1649022‑M1/71‑70 (MQ=255) taCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAg < 1:1974424/47‑1 (MQ=255) taCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTGc > 1:4532099/1‑65 (MQ=255) taCCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTGCAggg < 1:3592080/69‑1 (MQ=255) atcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttcaacacccgcgatgt < 1:1308592‑M1/68‑68 (MQ=255) atcgatagtcacgttttcctgcgcgtaggtatcggtataggttaatttttcttc > 1:5219208‑M1/1‑1 (MQ=255) | CCAAGACACTTGAGCCGTTAAGCGCCAAATACAAAAACATCGCGGGTGTTGAAGAAAAATTAACCTATACCGATACCTACGCGCAGGAAAACGTGACTATCGATATGGAAAAAGTGGATTTTAAAGCCCTGCAGGGTA > AP009048/2214782‑2214919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |