| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4547370 | 38 (0.650) | 13 (0.270) | 13/84 | NT | 31.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 25 (0.520) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > AP009048/4547302‑4547440 | gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1945035/70‑1 (MQ=255)gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt > 1:4393369‑M1/1‑69 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:4487408‑M1/1‑67 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:3516365‑M1/61‑1 (MQ=255) aacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata < 1:2952810‑M1/20‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca > 1:3363422‑M1/1‑59 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat < 1:3749583‑M1/21‑1 (MQ=255) cgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat < 1:185088‑M1/21‑1 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:3984439/1‑70 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:3304801/70‑1 (MQ=255) ttgactgccaacagtgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2095307‑M1/27‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:2595456‑M1/44‑70 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAATTAAATACAAGACAATTGGGGCCAAAc > 1:918464/1‑54 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:1334612‑M1/1‑51 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:218248/58‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:1744894/1‑70 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 1:4000103‑M1/43‑70 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:582334/1‑69 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat < 1:2594742‑M1/71‑24 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:3322050/51‑1 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt < 1:2504430/70‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgc < 1:192877‑M1/71‑27 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:2164629/61‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg > 1:2075292‑M1/1‑44 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:3087899/1‑71 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:1494040‑M1/36‑1 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:2070184‑M1/36‑71 (MQ=255) ataaAGTTAAAAAAACAAATAAGTACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:3107618/1‑71 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:3246464‑M1/39‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaa < 1:4604495‑M1/71‑33 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggaca < 1:4256370‑M1/70‑32 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAGTGTCCATATCataaata > 1:3182119/1‑59 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa > 1:421597‑M1/1‑38 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:3242005/1‑42 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCGATATCATAAATAAg < 1:2062242‑M1/31‑1 (MQ=255) agttttcccccaaaagatgaaacatTTGGGGCCAAACt < 1:3829386‑M1/13‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:1287078/1‑43 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:2012128/1‑43 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 1:4494713/1‑71 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:2703233/1‑39 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:630327/71‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:2119263/71‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:76833/71‑1 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:3768321‑M1/39‑1 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:4583103‑M1/47‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg > 1:4922271‑M1/1‑32 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:2271703/1‑46 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:3923004/70‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:3366157/71‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:4012182/1‑69 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:3721274/1‑69 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:3330038‑M1/22‑70 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat > 1:2718422/1‑45 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAttttga > 1:2233256‑M1/1‑29 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 1:2326206/1‑65 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:4508868/1‑68 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa < 1:4986142/71‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 1:2350178/70‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa < 1:3226616‑M1/55‑1 (MQ=255) ataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta > 1:661003‑M1/1‑24 (MQ=255) ataCAAGACAATTGGGGCCAtttttactcatagaggtaagcatcgcggacaaact < 1:2556631‑M1/55‑36 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt < 1:3830027‑M1/70‑53 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1491455/1‑70 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa < 1:56760/71‑1 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:3568413/1‑70 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:4241260/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 1:770390/1‑48 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:5274428‑M1/41‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:2173999/48‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:2636609/48‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:3078422/71‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2235017/71‑1 (MQ=255) tTTGGGGCCAAAGTGTCCATATCATAAATAAGTTACTTATTTTTTCTCAAGCATaaaaa > 1:3364302‑M1/2‑59 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:1562968/43‑1 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:3438891‑M1/38‑1 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt > 1:3381610‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaact < 1:3123419‑M1/43‑36 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:1730452‑M1/41‑1 (MQ=255) ggggCCAttttgactcatagaggaaagcatcgcggacaaactttttc > 1:759296‑M1/1‑7 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:3514346‑M1/71‑67 (MQ=255) ggCAAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:697188‑M1/71‑67 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:3940172‑M1/1‑71 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:902523‑M1/1‑71 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa > 1:4510230‑M1/1‑71 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg > 1:2083644‑M1/1‑2 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg > 1:177423‑M1/1‑2 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg > 1:329731‑M1/1‑2 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg < 1:2996103‑M1/71‑1 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgt < 1:2040193‑M1/71‑71 (MQ=255) | GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > AP009048/4547302‑4547440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |