| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4547370 | 38 (0.650) | 13 (0.270) | 13/84 | NT | 31.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 25 (0.520) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAA > AP009048/4547597‑4547736 | aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa < 1:1116999/70‑1 (MQ=255)aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa < 1:2944844/70‑1 (MQ=255)aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:2040193‑M2/71‑2 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:168235/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:177423‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:329731‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:2083644‑M2/1‑69 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAttgcc < 1:697188‑M2/71‑6 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcc < 1:3514346‑M2/71‑6 (MQ=255) tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:4020255/1‑71 (MQ=255) tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4053961/1‑71 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt > 1:4319478/1‑71 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgt < 1:3830027‑M2/70‑19 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:109023/1‑71 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:2347966/71‑1 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttat > 1:661003‑M2/1‑46 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:2837838/1‑71 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:3605558/1‑44 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca > 1:3381610‑M2/1‑43 (MQ=255) tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGa > 1:1847977/1‑70 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccc > 1:759296‑M2/1‑40 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1712998/1‑39 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa < 1:2927283/69‑1 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt > 1:913410/1‑71 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtg < 1:5200524/71‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca < 1:3123419‑M2/43‑9 (MQ=255) aGTTTGTCCGCGATGCTTACCTCTATGAGTAAAAAtggccccaattgtcttgtat < 1:2556631‑M2/55‑21 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 1:2057005/71‑1 (MQ=255) tttGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaact > 1:421597‑M2/1‑33 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt < 1:4604495‑M2/71‑40 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg > 1:4840227/1‑69 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt < 1:4256370‑M2/70‑40 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:1185900/1‑71 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGTGGAAAACtgtg < 1:3180172/66‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttatta > 1:2075292‑M2/1‑27 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt > 1:4922271‑M2/1‑27 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt > 1:4370375/1‑63 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtg > 1:5165428/1‑62 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattat < 1:192877‑M2/71‑46 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:3026535/1‑35 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg > 1:798388/1‑71 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa > 1:916843/1‑55 (MQ=255) aTGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaa < 1:2594742‑M2/71‑49 (MQ=255) cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:3858828/70‑1 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:4343340/1‑70 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg < 1:1737024/42‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:4839266/69‑1 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:3261125/51‑1 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg > 1:3090821/1‑59 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:4215830/1‑63 (MQ=255) aTGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataa > 1:1334612‑M2/1‑11 (MQ=255) tGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatc > 1:3363422‑M2/1‑10 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 1:4934025/71‑1 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca < 1:3048431/71‑1 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgtt > 1:2233256‑M2/1‑6 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctct > 1:4487408‑M2/1‑4 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4955079/1‑71 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:860027/1‑69 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:3325339/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:3291840/71‑1 (MQ=255) atggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttc > 1:4393369‑M2/1‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:3822809/71‑1 (MQ=255) | ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAA > AP009048/4547597‑4547736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |