New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | BS168_reference_genome | 3486759 = | 0 (0.000) | 22 (0.020) +ACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAG |
16/154 | 0.9 | 94.8% | intergenic (+1/+48) | araR/yvbT | transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase |
? | pSIJ663_pHT315_araE_xy | 9781 = | 4 (0.000) | intergenic (+5050/–) | ampR/– | –/– |
TGCTTGGAAAAGCAGCCGCCAAATATGTCATTGACTGCTTAGAGCATAAAAAGCCGAAGCAAGAGGATGTCATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT > BS168_reference_genome/3486634‑3486895 | gcttcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTa > 4:172455‑M1/126‑138 (MQ=255) cttcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATg < 8:204620‑M1/15‑1 (MQ=255) acaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTcccc < 7:172033‑M1/24‑1 (MQ=255) acaggaacatttggttctaattgagttggagtattcttcattttaaaataattcctttcatttcactgataatttaacacactttcaaaatagtgtcaaagtgtatttacgcagtAAAAAGCAATGTATGGTTCTcccc < 7:124923‑M1/24‑1 (MQ=255) ggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCt > 5:366038‑M1/104‑138 (MQ=255) ggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCt > 1:356400‑M1/104‑138 (MQ=255) gttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCttt > 6:14307‑M1/103‑139 (MQ=255) ttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTGTCCCCGCTACATTGCtttt < 4:128136‑M1/38‑1 (MQ=255) aattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtatttacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTta < 3:175687‑M1/42‑1 (MQ=255) gagttggagtattcttcattttcaaatacttgctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAg > 8:124923‑M1/94‑138 (MQ=255) gagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAg > 5:76889‑M1/94‑138 (MQ=255) gagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAg > 2:126274‑M1/94‑138 (MQ=255) gttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGtct > 1:163129‑M1/92‑111 (MQ=255) gttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGtct < 2:163129‑M1/20‑1 (MQ=255) gttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacctgtatttacgcagtAAAAAGCAAAGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTg < 4:292806‑M1/48‑1 (MQ=255) ttcttcattttcaaattcttgctttgatgtctctgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGt > 4:295280‑M1/83‑138 (MQ=255) ttcttcattttcaaatacttcctttcatgtcactgataatttaaaacactttcaaaatagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTTTatctgttatctgtt < 7:260798‑M1/57‑1 (MQ=255) ttcttcattttcaaatacttactttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAATCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTTTAGCTGTTTTATGtt < 8:142428‑M1/57‑1 (MQ=255) tcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGttt < 4:92363‑M1/58‑1 (MQ=255) cttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACAATGCTTTTTTTATAGATGTTTTCTGtttt < 4:184811‑M1/59‑1 (MQ=255) cttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCg > 7:124251‑M1/66‑138 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 5:115227‑M1/88‑1 (MQ=255) tgataatttaacacactttcaaaagagtgtcaacgtgtattgccgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaacg < 7:31018‑M1/90‑1 (MQ=255) tgataatataacccactatcaaaagactgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACTTTGCTTTTTTTATAGCTGTTATCTGATTTTCCAAACGTCAGCGATGATTTCAaacgaa > 4:270993‑M1/50‑137 (MQ=255) ataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaacg > 3:191296‑M1/48‑137 (MQ=255) atttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCAtt > 6:115227‑M1/45‑138 (MQ=255) aacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATtctgtc < 5:198417‑M1/99‑1 (MQ=255) aacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATtctgtc < 1:247793‑M1/99‑1 (MQ=255) acacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATTGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATtctgtct < 1:268352‑M1/100‑1 (MQ=255) acactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACAGTGCTTTTTTTATAGCTGTTAGCTGTTTTTCCAAACGTCAGCGATGATTTCATCCGAACGCATTCTGTCTGc < 6:354474‑M1/102‑1 (MQ=255) acactttcaaaagagtgtcaacgtgtattgacgcactAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGc > 4:94334‑M1/38‑139 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt < 7:80435‑M1/106‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt < 7:74777‑M1/106‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt < 1:17848‑M1/106‑1 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCaa > 4:175687‑M1/30‑139 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCaa > 3:92363‑M1/30‑139 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCaa > 3:132843‑M1/30‑139 (MQ=255) gtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt < 8:183531‑M1/116‑1 (MQ=255) gtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCgat > 4:87412‑M1/22‑96 (MQ=255) gtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCgat < 3:87412‑M1/75‑1 (MQ=255) gtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCt < 1:349264‑M1/118‑1 (MQ=255) acgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGt < 4:332582‑M1/122‑1 (MQ=255) cgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGtt > 8:172033‑M1/17‑139 (MQ=255) ttgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCa < 2:75578‑M1/128‑1 (MQ=255) gcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGATCGCa < 7:2531‑M1/92‑1 (MQ=255) gcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa > 8:2531‑M1/6‑97 (MQ=255) gcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCAGTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAAtt < 4:8921‑M1/133‑1 (MQ=255) cagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTc < 6:255371‑M1/135‑1 (MQ=255) agtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAACATAATTTCg < 3:373994‑M1/136‑1 (MQ=255) gtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt < 5:318638‑M1/137‑1 (MQ=255) | TGCTTGGAAAAGCAGCCGCCAAATATGTCATTGACTGCTTAGAGCATAAAAAGCCGAAGCAAGAGGATGTCATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT > BS168_reference_genome/3486634‑3486895 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |