| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | = 2411050 | 70 (0.760) | 59 (0.950) | 25/250 | 1.7 | 45.7% | intergenic (‑461/‑36) | fmnP/serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | NA (NA) | intergenic (+5050/–) | ampR/– | –/– | |||||
TATCCTTTACTGCGTCAATACACGTTGACACTCTTTTGAGAATATGTTAAATTATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/2410993‑2411050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTA > pSIJ663_pHT315_araE_xy/9781‑9914 tgcttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTATCAAGAAGACATTC > 8:369932/6‑138tgcttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTC > 8:358988/6‑138tgcttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTC > 7:396633/6‑138tgcttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTC > 3:377954/6‑138 cttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAAT > 3:288389/4‑139 cttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTG < 8:222298/74‑1 cttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTG > 7:222298/4‑77 cttTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGAGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAGCCAAATGTACCTGTAACAAGAAGCCATTCAAT > 3:262980/4‑139 cttTTTACTGCGTCAATACACGTTGAAACTATTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGTAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATACAAT > 3:93228/4‑139 ttaTTACTGCTTCAATACACGTTGACACTCTTTTGAAACTGAGTTAAATTATCAGTGACAGGAAAGTAAGTATTTGAAAATGAAGAATACTCCAACTCAAATAGAACCAAATGTTACTGTAACAAGATGCCATTC > 1:84702/4‑135 TTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAAT > 2:199255/1‑136 ACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGG > 1:67622/1‑136 CTGCGTCAATACACGTCTCCACTATTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATCAACAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATT < 5:29308/138‑1 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTTTCATGAAAGTAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGAT < 2:279002/134‑1 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGT > 3:360124/1‑138 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGT > 7:162363/1‑138 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTG < 4:377954/137‑1 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATT > 5:319501/1‑93 CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATT < 6:319501/93‑1 GTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCA > 6:12914/1‑139 CACGTTGACACTCTTTTGAATGTGTTTTATATTATCAGTCACATTAAAGGAAGTATTTCAAAATGAAGAATACTCCAACTCAATTATAACCAAATCTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAT < 7:210320/139‑1 CACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAT < 7:341266/139‑1 CACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAT < 7:358988/139‑1 GTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGATAATGAAGAATACTCCAACTCAATTAGAACACAATGTTCCTGTAACAAGAAGCAATTCAATGGGATGTGTCATTTTGATCT > 5:33988/1‑138 GTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCT > 5:75972/1‑138 GTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATAATCCAACTCAATTAGAACCAAATGATCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTATTATCT > 6:211753/1‑138 ttaaACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGAATTTAAAAATTAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGTATTTGTCATTTTGATCTCAT > 6:145635/5‑139 TGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATTCTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAT > 5:5891/1‑139 TGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAT > 6:65422/1‑139 GACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATG > 8:92630/1‑139 GACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTAAATTAGAACCAAATGTTCCTGTAACATGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATG > 4:114246/1‑139 ACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATG < 4:288389/138‑1 TCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGG > 5:43577/1‑139 TCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGG > 3:361029/1‑139 TTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCG > 8:250642/1‑139 TTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCG > 6:335951/1‑139 TTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGG > 1:101596/1‑136 gtgttTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGG < 3:94885/134‑1 gtgTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGG > 5:277561/4‑139 gTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCG > 5:281857/2‑139 gTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCG > 8:32745/2‑139 TTAAATTATCCGTGACTCGAAAGGAAGTATTTGAAAAGGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCG < 1:83641/136‑1 TTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCG > 1:403403/1‑136 TAAATTATCTGTTACATTAAAGTAATTATTTTAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCT < 6:75972/138‑1 TAAATTATCATTTACTTGAAAGGAAGTATTTTAAAATCAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCT < 6:281857/138‑1 TAAATTATCAGTGTCATTAAAGTAAGTATTTGAAAATTAAGAATACTCCAACTCAATTAGAACCAAATGTTACTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCT < 7:369932/138‑1 TAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCT < 7:32745/138‑1 AATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA < 8:396633/138‑1 AATTATCAGTGAAATGAAAGGACGTCTTTGAAAATTCAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA < 4:270799/138‑1 taATCAGTGACATTAAAGTAATTATTTTAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTG < 6:43577/137‑1 TTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTG < 4:361029/139‑1 ttctGTGACTTTAAAGGAAGAATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT < 6:383903/134‑1 ATCAGTGACATTAATGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT < 5:228926/138‑1 ATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT < 4:360124/138‑1 ATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGATCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTAT < 1:155944/135‑1 ATCAGTGAAATGAAAGGAAGTATTTTAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT < 6:71146/138‑1 TCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTA < 6:277561/138‑1 TCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTA < 8:360363/138‑1 TCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTG < 2:67622/136‑1 TATCCTTTACTGCGTCAATACACGTTGACACTCTTTTGAGAATATGTTAAATTATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/2410993‑2411050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTA > pSIJ663_pHT315_araE_xy/9781‑9914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |