New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BS168_reference_genome = 241105070 (0.760)59 (0.950) 25/250 1.7 45.7% intergenic (‑461/‑36) fmnP/serA FMN permease/3‑phosphoglycerate dehydrogenase
?pSIJ663_pHT315_araE_xy 9781 = NA (NA)intergenic (+5050/–) ampR/– –/–

TAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA  >  pSIJ663_pHT315_araE_xy/9705‑9909
                                                                            |                                                                                                                                
tAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGtt                                                                       >  2:241292/1‑136 (MQ=255)
           ttAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATTAAGTTTGACATGAAAGGAAGTATTTGAAAATGAACAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACaag                                                            <  1:241292/136‑1 (MQ=255)
                  ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                   >  4:110400/1‑138 (MQ=255)
                                      aGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAt                              <  3:110400/139‑1 (MQ=255)
                                                                  aaaTGAAGTTTGACATGAAAGGAAGTATTTGAAAATTAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTa  <  5:154202/139‑1 (MQ=255)
                                                                            |                                                                                                                                
TAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA  >  pSIJ663_pHT315_araE_xy/9705‑9909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.