New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	= 2653333	22 (0.700)	3 (0.100)	3/224	NT	17.6%	pseudogene (341/471 nt)	sigKn	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half)
	?	BS168_reference_genome	2701367 =	7 (0.230)					pseudogene (30/417 nt)	sigKc	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment)

TGAAAAAGTTCGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  BS168_reference_genome/2653192‑2653333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGATA  >  BS168_reference_genome/2701367‑2701503                                                                                                                                                                                                                                                                                         ttAAAAAGTTCGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAA                                                                                                                                              >  4:61750/3‑139                                               CATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGAC                                                                                                >  2:53444/1‑139                                                 TCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGT                                                                                              >  5:65179/1‑139                                                         ATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTC                                                                                      >  8:175954/1‑139                                                                                                        AAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATG                                                                                                                                            >  7:276972/1‑38                                                                                                        AAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATG                                                                                                                                            <  8:276972/38‑1                                                                                                                                            TGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGA    >  5:75899/1‑138                                                                                                                                             tAAAACCCCATCCATTGGCGCCAATACAAAAAAAAAAAAACCCACGGCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGATA  <  4:254233/138‑1                                                                                                                                                                                                                                                                                         TGAAAAAGTTCGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  BS168_reference_genome/2653192‑2653333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGATA  >  BS168_reference_genome/2701367‑2701503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.