New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	= 2653333	22 (0.700)	3 (0.100)	3/224	NT	17.6%	pseudogene (341/471 nt)	sigKn	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half)
	?	BS168_reference_genome	2701367 =	7 (0.230)					pseudogene (30/417 nt)	sigKc	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment)

CGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTCAAGAGTTAAGTTATCT  >  BS168_reference_genome/2653202‑2653470                                                                                                                                    |                                                                                                                                          cGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGt                                                                                                                                     >  6:208922/1‑138 (MQ=255)            gTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAgg                                                                                                                         <  1:213034/139‑1 (MQ=255)             aggtatccccttcattcgctaagaaacgtttaagcatttattacaggaaactgactcaacatttatttagtcaaactgttacgggaaatttatgccccccctttttgtaatgaatAATGAGATTGTAATTACAAAAgg                                                                                                                         >  6:231040‑M1/116‑138 (MQ=255)               aGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAggggg                                                                                                                      <  7:216359/139‑1 (MQ=255)               aGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAgggg                                                                                                                       <  4:265419/138‑1 (MQ=255)                      agagGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATa                                                                                                               <  5:139813/139‑1 (MQ=255)                           ttcgctaagaaacgtttaagcatttattacaggaaactgactcaacatttatttagtcaaactgttacgggaaatttatgccccccctttttgtaatgaatAATGAGATTGTAATTACAAAAGGGGGGTGCATACAccc                                                                                                          >  7:184696‑M1/102‑139 (MQ=255)                           aCTTACTCTCCATCGGAACGATCGGGCTAATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCGGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACAccc                                                                                                          <  7:148904/139‑1 (MQ=255)                           aCTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACAccc                                                                                                          <  8:1623/139‑1 (MQ=255)                           aCTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACAccc                                                                                                          <  4:117214/139‑1 (MQ=255)                           aCTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACAccc                                                                                                          <  3:208328/139‑1 (MQ=255)                            tcgctaagaaacgtttaatcatttattacaggaaactgactcaacatttatttagtcaaactgttacgggaaatttatgccccccctttttgtaatgaatAATGAGATTGTAATTACAAAAGGGGGGTGCATACAcccc                                                                                                         <  4:171861‑M1/39‑1 (MQ=255)                                    ccATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTaa                                                                                                  >  3:169100/1‑138 (MQ=255)                                     cATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAaatcctcatgcatttgcgcgcattgaaaaaaacaaaaaaagac                                                                                                >  2:53444‑M1/1‑96 (MQ=255)                                     cATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATa                                                                                                >  7:120683/1‑139 (MQ=255)                                       tCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAaatcctcatgcatttgcgcgcattgaaaaaaacaaaaaaagacgt                                                                                              >  5:65179‑M1/1‑94 (MQ=255)                                        gtttaatcatttattacaggaaactgactcaacatttatttagtcaaactgttacgggaaatttatgccccccctttttgtaatgaatAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGt                                                                                             >  3:171861‑M1/89‑139 (MQ=255)                                           aacgtgcGGGCTTATTAATGGACTTGAAAGCAATTCCGCTGGAAAAGGGCAAATGCTTGCGACGTATGCAGCGTGTTGTTTTGAAAATGATTTTGTAATAACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTc                                                                                          <  2:142891/133‑1 (MQ=255)                                            aCGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTc                                                                                          <  8:120683/138‑1 (MQ=255)                                             cGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCaa                                                                                        <  4:169100/139‑1 (MQ=255)                                               aTCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAaatcctcatgcatttgcgcgcattgaaaaaaacaaaaaaagacgtctcccttc                                                                                      >  8:175954‑M1/1‑86 (MQ=255)                                                                          tttatttagtcaaactgttacgggaaatttatgccccccctttttgtaatgaatAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTa                                                           >  4:21347‑M1/55‑139 (MQ=255)                                                                                 cTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAActtctt                                                    >  6:63826/1‑139 (MQ=255)                                                                                    gAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCttt                                                   <  5:63826/137‑1 (MQ=255)                                                                                      aaaGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAggggg                                                                                                                      >  8:53764/1‑68 (MQ=255)                                                                                      aaaGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAggggg                                                                                                                      <  7:53764/68‑1 (MQ=255)                                                                                                          gTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGtttt                           >  3:193937/1‑139 (MQ=255)                                                                                                                   gAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCtt                   >  2:54729/1‑138 (MQ=255)                                                                                                                   gAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTc                  <  1:54729/139‑1 (MQ=255)                                                                                                                      gtgtATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTCaa                <  5:208922/138‑1 (MQ=255)                                                                                                                                 ATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTCaa                >  7:45399‑M1/1‑127 (MQ=255)                                                                                                                                 ATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTCaa                <  8:45399‑M1/127‑1 (MQ=255)                                                                                                                                  tGAaatcctcatgcatttgcgcgcattgaaaaaaacaaaaaaagacgtctcccttcacgatccgatcgggcaggataaggaagggaatgaaataagcctgattgacgttttgaaatcagaaaacgaagacgtgataga    >  5:75899‑M1/1‑3 (MQ=255)                                                                                                                                   taaaaccccatccattggcgccaatacaaaaaaaaaaaaacccacggctcccttcacgatccgatcgggcaggataaggaagggaatgaaataagcctgattgacgttttgaaatcagaaaacgaagacgtgatagata  <  4:254233‑M1/138‑138 (MQ=255)                                                                                                                                    |                                                                                                                                          CGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGATCGGGCTTATTAAAGGAATTGAAAGCTATTCCGCTGGAAAAGGGACAAAGCTGGCGACGTATGCAGCGAGGTGTATTGAAAATGAGATTGTAATTACAAAAGGGGGGTGCATACACCCCTCTTTAATACGTTTCAATATATATGGTGTCAGAATCCACAATGGTAACTTCTTTCACGATAAAGTTAACAATTGTTTTTTTATCTTCAAGAGTTAAGTTATCT  >  BS168_reference_genome/2653202‑2653470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.