New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BS168_reference_genome 3484069 =163 (1.250)23 (0.310)
+AAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGT		 17/184 1.1 25.2% intergenic (‑295/+3) cggR/araE transcriptional regulator of gapA/arabinose‑related compounds permease
?Exported 6207 = 25 (0.350)coding (320/324 nt) lacZalpha /vntifkey=4

CTTTCGGGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BS168_reference_genome/3484202‑3484069
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGAC  >  Exported/6207‑6300
                                                                                                                                      ||||||||||||||||||||||||||||||||||                                                                                              
CTTTCGGGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGC                                                                                                                             >  6:308900/1‑139
   TCGGGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCG                                                                                                                            >  7:14211/1‑137
    CGGGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCACAACCGAAGACCAACTCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCA                                                                                                                          <  5:169675/138‑1
                      TTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTT                                                                                                       >  3:510681/1‑139
                       TGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTT                                                                                                      >  8:517296/1‑139
                       TGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTT                                                                                                      >  3:166190/1‑139
                       TGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATAGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTT                                                                                                      >  1:313639/1‑139
                         GATCTTTGCGGTGATTAACATCCTGTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAACAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTT                                                                                                    <  4:145050/139‑1
                               TGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAATAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTC                                                                                               <  8:415798/138‑1
                               TGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGTATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTC                                                                                               <  8:62214/138‑1
                               TGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCA                                                                                              >  7:457592/1‑139
                               TGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTC                                                                                               >  6:361565/1‑138
                               TGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTC                                                                                               <  5:308900/138‑1
                                                TTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCG                                                                             >  3:135289/1‑139
                                                      TCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGCCACCC                                                                       >  2:25817/1‑139
                                                         TGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCC                                                                    >  4:361254/1‑139
                                                              GTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTATTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACAC                                                               >  3:100836/1‑139
                                                                            cCCAGAAACGAATAACAAATCGCTCGTGGAAAATGAATAGCTTTGGATAAAATCAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAC                                                       <  3:306702/132‑1
                                                                            TCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCC                                                 >  3:530988/1‑139
                                                                                      AAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGCCGCGCCCTGACCGGCTT                                       >  8:223888/1‑139
                                                                                      AAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTT                                       >  8:576697/1‑139
                                                                                      AAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCAGACCGGCat                                       >  2:275678/1‑137
                                                                                               TCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCC                              >  1:154503/1‑139
                                                                                                   TCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGG                           >  5:247003/1‑138
                                                                                                            TTGAAAAGCTTTGTATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTA                 <  5:560061/139‑1
                                                                                                            TTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTT                  >  1:244990/1‑138
                                                                                                                AAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGA             <  4:530988/139‑1
                                                                                                                 AAGCTTTGTAAAAAATTAAAAAACGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGAC            <  1:275678/139‑1
                                                                                                                           TAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGAC  <  4:510681/139‑1
                                                                                                                           TAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGA   <  4:100836/138‑1
                                                                                                                           TAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGA   <  2:244990/138‑1
                                                                                                                                      ||||||||||||||||||||||||||||||||||                                                                                              
CTTTCGGGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BS168_reference_genome/3484202‑3484069
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGAC  >  Exported/6207‑6300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.