New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	2471183 =	53 (0.880)	9 (0.160)	8/222	NT	19.4%	intergenic (‑532/+42)	U712_12610/U712_12615	Sporulation‑specific extracellular nuclease/Putative DNA recombinase
	?	CP006881	= 2519215	24 (0.420)					coding (24/417 nt)	U712_12925	RNA polymerase sigma‑K factor

AGATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/2471324‑2471183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCTTAAACGTTTCTTAGCGAATGAAGGGGATACCTTAAATAACCAAGCTAC  <  CP006881/2519215‑2519085                                                                                                                                                                                                                                                                                   AGATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTC                                                                                                                                        <  4:262937/139‑1   ATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCAT                                                                                                                                      <  7:226865/139‑1   ATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCAT                                                                                                                                      <  8:281230/139‑1   ATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTAAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCAT                                                                                                                                      <  4:42308/139‑1    TAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCAT                                                                                                                                      <  8:34505/138‑1                                                                   GGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTTCAATATAATTATTAATTAAAAAAACGGGGGGCATAAATTTCACGTAACAGTTTGACTAAATAAATTTTtatt                                                                       >  6:230182/1‑134                                                                                        TGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCT                                                  >  2:242578/1‑138                                                                                          AAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCTTA                                                >  2:221208/1‑138                                                                                             CGTATTAAAGAGGGGTGTATGCACCCCCCGTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTATTATATGCTTAAACG                                            >  1:349068/1‑139                                                                                                         GGGTGTATGCACCCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCTTAAACGTTTCTTAGCGAA                                >  7:163249/1‑139                                                                                                                     CCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAA                                                      <  3:159707/105‑1                                                                                                                     CCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAA                                                      >  4:159707/1‑105                                                                                                                     CCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAA                                                       <  1:313130/104‑1                                                                                                                     CCCCCTTTTGTAATTACAATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAA                                                       >  2:313130/1‑104                                                                                                                                       ATCTCATTATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCTTAAACGTTTCTTAGCGAATGAAGGGGATACCTTAAATAACCAAGCTAC  <  8:163249/139‑1                                                                                                                                                                                                                                                                                   AGATAACTTAACTCTTGAAGATAAAAAAACAATTGTTAACTTTATCGTGAAAGAAGTTACCATTGTGGATTCTGACACCATATATATTGAAACGTATTAAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAATCTCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/2471324‑2471183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattATTCATTACAAAAAGGGGGGGCATAAATTTCCCGTAACAGTTTGACTAAATAAATGTTGAGTCAGTTTCCTGTAATAAATGCTTAAACGTTTCTTAGCGAATGAAGGGGATACCTTAAATAACCAAGCTAC  <  CP006881/2519215‑2519085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.