New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	2471183 =	53 (0.880)	9 (0.160)	8/222	NT	19.4%	intergenic (‑532/+42)	U712_12610/U712_12615	Sporulation‑specific extracellular nuclease/Putative DNA recombinase
	?	CP006881	= 2519215	24 (0.420)					coding (24/417 nt)	U712_12925	RNA polymerase sigma‑K factor

ATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACG  >  CP006881/2519083‑2519348                                                                                                                                     |                                                                                                                                      aTGTAGCTTGGTTATTTAAGGTATACCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                 <  6:36747/139‑1 (MQ=255)   gTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagat                                                                                                                               <  8:163249‑M2/139‑9 (MQ=255)        ttGGTTATTTAAGGGATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGTAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCa                                                                                                                          <  6:344488/139‑1 (MQ=255)                      tATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCa                                                                                                            >  6:149658/1‑139 (MQ=255)                      tATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTATGTAATGAATAATGAAATCCTCATGCATTTGAGCGCa                                                                                                            >  5:35499/1‑139 (MQ=255)                         ccccTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCAtt                                                                                                          >  5:294214/1‑138 (MQ=255)                         ccccTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCACCCCTTTTTGTAATGAATAATGAAGTCCTCATGCATTTGCGCGCttt                                                                                                          >  1:304343/1‑138 (MQ=255)                               cATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGaaaaa                                                                                                    >  6:308902/1‑138 (MQ=255)                               cATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGaaaaa                                                                                                    <  5:308902/138‑1 (MQ=255)                                 ttCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacaccc                                                                                                 >  7:163249‑M2/1‑101 (MQ=255)                                             cGTTTAAGCATATAATACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaacggggggtgcatacacccctctttaatacg                                                                                     >  1:349068‑M2/1‑89 (MQ=255)                                               tttAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGtct                                                                                   >  3:347079/1‑139 (MQ=255)                                                 tAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacacccctctttaatacgttt                                                                                  >  2:221208‑M2/1‑85 (MQ=255)                                                   aGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacacccctctttaatacgtttca                                                                                >  2:242578‑M2/1‑83 (MQ=255)                                                       tttATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggg                                                                                                             <  3:159707‑M2/105‑27 (MQ=255)                                                       tttATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggg                                                                                                             >  4:159707‑M2/1‑79 (MQ=255)                                                       tttATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGAATTGAAAAAAACAAAAAAAGACGTCTCCCTTCAc                                                                           >  1:280842/1‑139 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggg                                                                                                             >  2:313130‑M2/1‑78 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggg                                                                                                             <  1:313130‑M2/104‑27 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCAt                                                                                                                         <  1:320746/92‑1 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCAt                                                                                                                         >  2:320746/1‑92 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCTTTGAAAAAAACAAAAAAAGACGTCTCCCTTCAc                                                                           >  1:152601/1‑138 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACTTCTCCCTTCAcg                                                                          >  1:112963/1‑139 (MQ=255)                                                         tattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCAc                                                                           >  7:214117/1‑137 (MQ=255)                                                               aGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAAAGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCAcgatccgat                                                                   >  2:272032/1‑139 (MQ=255)                                                                        aataaaaatttaTTTAGTCAAACTGTTACGTGAAATTTATGCCCCCCGTTTTTTTAATTAATaattatattgaaattacaaaaggggggtgcatacacccctctttaatacgtttcaatatatatggtgtcagaatcc                                                           >  6:230182‑M2/5‑62 (MQ=255)                                                                                    tttaGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGaa                                              >  7:256805/1‑139 (MQ=255)                                                                                     atactCAAACTGTTACGTAAAATTTAGCCCCCCACTTTTTTAAATCAAAAATCAAATCCTCATCCATTGGCCCGAATATAAAAAAAAAAAAACCCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGaa                                              <  2:280842/134‑1 (MQ=255)                                                                                             aCTGTTCCGGTAAATTTATGCCCCCACTTTTTTTAATTAATAATTAAATCATCATGCATTTGCGCGCATTCAAAAAAAAAAAAAAACACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAg                                     <  3:281513/139‑1 (MQ=255)                                                                                                   aCGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTACCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGAt                               >  4:50928/1‑139 (MQ=255)                                                                                                         aaTTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATTAAATAAGCCTGATTGACGt                         >  5:91897/1‑139 (MQ=255)                                                                                                         aaTTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGt                         >  1:9577/1‑139 (MQ=255)                                                                                                                         ttttGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGAAAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAAc         >  1:80086/1‑139 (MQ=255)                                                                                                                                atgaataatgaaATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg  >  4:265090/1‑139 (MQ=255)                                                                                                                                atgaataatgaaATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg  >  6:244454/1‑139 (MQ=255)                                                                                                                                     |                                                                                                                                      ATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACG  >  CP006881/2519083‑2519348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.