New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	3304613 =	1 (0.020)	26 (0.030) +ACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAG	18/132	NT	5.1%	intergenic (+1/+48)	U712_16995/U712_17000	Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT
	?	pSIJ663_pHT315_araE_xy	9781 =	1704 (0.630)					intergenic (+5050/–)	ampR/–	–/–

ACGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/3304749‑3304613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAT  >  pSIJ663_pHT315_araE_xy/9781‑9915                                                                                                                                          ||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                                        ACGAAATTATGTTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCCTCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAATAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTAC                                                                                                                                                                                         <  2:118359/139‑1 ACGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTAC                                                                                                                                                                                         <  7:139032/139‑1 ACGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTAC                                                                                                                                                                                         <  2:69970/139‑1  CGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACT                                                                                                                                                                                        >  2:113712/1‑139  CGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTGTACT                                                                                                                                                                                        >  8:14226/1‑139     AATTATGGTTAACTCAGCAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGATATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCG                                                                                                                                                                                     <  5:163314/139‑1                    AGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTG                                                                                                                                                                        <  7:130063/137‑1                     GAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACA                                                                                                                                                                     <  2:23460/139‑1                           TTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTT                                                                                                                                                               >  1:143202/1‑139                                ACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAA                                                                                                                                                          <  8:291972/139‑1                                    GCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGACTCAATACACGTTGACACTCATTAGAAAGTGT                                                                                                                                                      >  3:244086/1‑139                                            AATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAAT                                                                                                                                               >  2:90744/1‑138                                              TGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCCTACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTAT                                                                                                                                            >  6:188866/1‑139                                              TGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTAT                                                                                                                                            >  4:122242/1‑139                                                 GTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAG                                                                                                                                         >  3:80625/1‑139                                                  TTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCTATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGT                                                                                                                                        <  5:194661/139‑1                                                  TTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGT                                                                                                                                        >  2:279843/1‑139                                                  TTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAA                                                                                                                                                          >  1:178801/1‑121                                                  TTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAA                                                                                                                                                          <  2:178801/121‑1                                                     ggTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGAC                                                                                                                                     <  2:235958/137‑1                                                        TGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACAT                                                                                                                                   >  3:171950/1‑138                                                             TCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGG                                                                                                                             <  8:112378/139‑1                                                                 CGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAG                                                                                                                          >  3:157848/1‑138                                                                             GAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATG                                                                                                              <  3:122242/138‑1                                                                                  ACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAA                                                                                                         >  8:23150/1‑138                                                                                  ACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAA                                                                                                         >  2:214405/1‑138                                                                                          CAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC                                                                                                <  4:80625/139‑1                                                                                             CTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTC                                                                                              >  1:64775/1‑138                                                                                             CTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTC                                                                                              >  2:174580/1‑138                                                                                                TAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGCCACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAAT                                                                                           >  8:181080/1‑138                                                                                                TAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAAT                                                                                           >  6:66644/1‑138                                                                                                     AAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAATTTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAAC                                                                                     >  1:232062/1‑139                                                                                                      AAGCAATGTAGCGGGGCGCCCCTTACATTGCTTTTTACTGCGTCATGACACGTTGTCACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAGCTCAATTAGAACC                                                                                    >  5:168202/1‑139                                                                                                       AGCAATGTAGCGGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACC                                                                                    >  7:198546/1‑138                                                                                                                  GGGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGT                                                                        <  2:64775/139‑1                                                                                                                   GGGAGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGT                                                                        >  7:15368/1‑138                                                                                                                      AGACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTATGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAAC                                                                     >  1:90403/1‑138                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAAC                                                                     >  7:152837/1‑136                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATT                                                                                          >  6:32275/1‑115                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATT                                                                                          <  5:32275/115‑1                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATG                                                                                                              >  3:20595/1‑95                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATG                                                                                                              <  4:223131/95‑1                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATG                                                                                                              <  4:20595/95‑1                                                                                                                        ACCCATACATTGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATG                                                                                                              >  3:223131/1‑95                                                                                                                                  TGCTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTC                                                         >  1:124627/1‑138                                                                                                                                    CTTTTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAAT                                                      >  5:288469/1‑139                                                                                                                                       TTTACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGG                                                    >  3:166574/1‑138                                                                                                                                            TGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGT                                                                        >  1:55473/1‑113                                                                                                                                            TGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGT                                                                        <  2:55473/113‑1                                                                                                                                              CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGT                                             >  5:234733/1‑138                                                                                                                                              CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGT                                             >  3:201740/1‑138                                                                                                                                              CGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTG                                              <  8:152837/137‑1                                                                                                                                                      CACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATCCTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAT                                    <  5:188866/139‑1                                                                                                                                                      CACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAT                                    <  8:198546/139‑1                                                                                                                                                       ACGTTGACACACTTTTGAAAGTGTGTTAAATTATCTGTGAAATGAAAGTAAGTTTTTGAAACTGACGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATC                                   <  1:214405/139‑1                                                                                                                                                         GTTGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACAAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCT                                  >  4:63947/1‑138                                                                                                                                                           TGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCGATGGGATTTGTCATTTTGATCTCAT                               >  2:76975/1‑139                                                                                                                                                           TGACACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAT                               >  6:206672/1‑139                                                                                                                                                           TGACACACTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAAAACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCAATTAAATGGGATTTGTCATTTTGAACTCAT                               >  8:14149/1‑139                                                                                                                                                              CACTCTTTTGAAAGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTG                            >  6:201487/1‑139                                                                                                                                                                          AGTGTGTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTG                <  2:90403/139‑1                                                                                                                                                                              TGTTAAATTATCCGGGACATGAAAGTAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCGTGGCG             <  8:224349/138‑1                                                                                                                                                                               GTTAAATTATCAGTGACATGAAAGGAAGTATTTTAAAATCAATAATACTCCAACTCAATTAGAAGCAAATGTTCCTTTAAGAAGAAGACATTCTATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGG            <  7:14149/138‑1                                                                                                                                                                               GTTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGC           >  8:115592/1‑139                                                                                                                                                                                TTAAATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCT          <  7:136587/139‑1                                                                                                                                                                                  AAATTATCAGTGACATGAAAGGAAGTATTTCAAAATCAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA        <  4:66202/139‑1                                                                                                                                                                                   AATTATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTA        <  5:201487/138‑1                                                                                                                                                                                       ATCAGTGACATGAAAGGACGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT    <  1:16431/138‑1                                                                                                                                                                                       ATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT    <  7:181080/138‑1                                                                                                                                                                                       ATCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT    <  2:167543/138‑1                                                                                                                                                                                       ATCAGTGAAATGAAAGGATTTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT    <  6:288469/138‑1                                                                                                                                                                                        TCAGTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAT  >  8:138169/1‑139                                                                                                                                          ||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                                        ACGAAATTATGGTTAACTCAGAAACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTTGGAAAAACAGATAACAGCTATAAAAAAAGCAATGTAGCGGGGAGACCCATACATTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/3304749‑3304613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAT  >  pSIJ663_pHT315_araE_xy/9781‑9915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.