BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	pSIJ663_pHT315_araE_xy	= 5551	44 (0.010)	4089 (1.030)	195/240	0.0	99.0%	intergenic (+820/–)	ampR/–	–/–
*	?	pSIJ663_pHT315_araE_xy	9889 =	NA (NA)	4089 (1.030)	195/240	0.0	99.0%	intergenic (+5158/–)	ampR/–	–/–

Only 100 of 4318 total aligned reads displayed.

TTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/5409‑5551

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGAGTT  >  pSIJ663_pHT315_araE_xy/9889‑10026

TTATAGCCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCAATGGAAAAAAGCCAGCAACCCGGCCATTTTAAGGTTCCTGGCCTTTTGCTGGCCGTTTGCTCAC                                                                                                                                                >  4:279719/1‑139

    AGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT                                                                                                                                            >  5:103692/1‑139

     GTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTTCTGGCCTTTTTCTCACAAGTG                                                                                                                                           >  4:304611/1‑139

     GTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTG                                                                                                                                           >  4:205117/1‑139

        cgGTCGGGTTCCGCCACCTCTGACTTGCGCGGCGATTTTTGGGAGGCGCGGCAGGGGGGCGGAGCCTATGGAACAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        <  3:194806/137‑1

        CTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        <  3:312895/139‑1

           TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGTTGCTACTCAGGGGGGCGGAGCCTATGGAAAAACGCCCGCAACGCCGCCATTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCACAAGTGCGGCtt                                                                                                                                     >  4:76426/1‑137

           TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  3:131565/1‑139

           TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  8:260097/1‑139

           TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  8:313580/1‑139

           TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  5:145333/1‑139

           TCGGGTTTCGCCACCCCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  7:39354/1‑139

                  tcaCCACCTCTGAGTTGAGCGGCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCGGGCCTTTTGCTGGCCTTTTGCTCACATGAGCGGCGGGGCTTG                                                                                                                               <  8:207234/135‑1

                  agaccgCCTCTGACTCGAGCGGCGATTTTTGTGTGGCTCGGCTGGGGGGGGGAGCGTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGG                                                                                                                              <  1:164548/133‑1

                  TCGCCACCTCTGAGTTGAGCGTCGATTTTTGTGATGCTCGGCAGGGGGGGGGAGCCTTTGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTG                                                                                                                               <  7:245262/138‑1

                    GCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCG                                                                                                                            <  5:341577/139‑1

                     CCACCTCTGACTTGAGCGTCGATTTTTGTGATGCGAGTCAGGGGGGCGGCGCCTATGGAAAAACGCCCGCAACGCGGCCTTTTTAAGGTTCCTGGGCTTTTTCTGGCCTTTTTCTCACATGTGCGGCGGGGCGTGGCGG                                                                                                                           >  2:208628/1‑139

                       ACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  8:151984/139‑1

                       ACCTCGGACTGGAGCGGCGAGTTTGGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  4:181495/139‑1

                       ACCGCTGACTTGCGCGGCGATTTTTGTGCTGCTCGTCCGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  5:268363/139‑1

                         CTCTGACTTGTGGGTCGTTTTTTGTGATGCTGGTCTGGGGGGGGGAGCATATGTAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTA                                                                                                                       <  2:286093/139‑1

                         CTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTA                                                                                                                       <  8:58054/139‑1

                         CTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTAAGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTA                                                                                                                       >  2:59551/1‑139

                              actttcGCGTCGTTTTTTGGGATCCTCGTCAGGGGGGCGGAGCCTATGCAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  1:141807/132‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  3:75502/138‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  7:182847/138‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  6:157611/138‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  3:265773/138‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  6:135866/138‑1

                              ACTTGAGCGTCGATTTTTGTGATGCTCGGCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  3:17201/138‑1

                                  GAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGG                                                                                                               <  7:79448/138‑1

                                  GAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCCCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGC                                                                                                              >  5:83831/1‑139

                                   AGCGTCGATTTTTGTGCTGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCACCAACCCCGCCGTTTTACGGTTCCTGGCCATTTGCTGGGCTTGTGCTCACAAGTGCGGCGGGGCTTGGCGGCGTATTGTATGGCa                                                                                                             >  6:340337/1‑138

                                   AGCGTCGATTTTTGTGATGCTTGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCGTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGGGCACATGTGCGGCGGGGCTTTGCGGCTTATTGTATGGC                                                                                                              >  4:234154/1‑138

                                   AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGC                                                                                                              >  8:235524/1‑138

                                   AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  1:20860/1‑133

                                   AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCG                                                                                                                            <  3:97527/124‑1

                                   AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGC                                                                                                                             <  7:224806/123‑1

                                     CGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCGGCGGGGCTTGGCGGCTTATTTTATTGCTAT                                                                                                           >  1:253379/1‑139

                                          ATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACAC                                                                                                      >  7:316603/1‑139

                                          ATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACAC                                                                                                      >  7:110714/1‑139

                                               TGTGATGCTCGTCTGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCA                                                                                                  <  3:335123/138‑1

                                               TGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCA                                                                                                  <  5:292825/138‑1

                                                     gcggGTCTGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCAGATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTT                                                                                           <  6:216788/135‑1

                                                        CGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGATCACATGTGAGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTG                                                                                        >  7:202823/1‑139

                                                         GTCAGGGGGGCGGAGCCTTTGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGG                                                                                       <  5:12466/139‑1

                                                            AGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCACACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGC                                                                                    <  5:32115/139‑1

                                                                 GGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCG                                                                               >  1:186250/1‑139

                                                                 GGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCG                                                                               >  8:290617/1‑139

                                                                 GGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACA                                                                                                       >  8:79825/1‑115

                                                                   CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGT                                                                             <  2:184132/139‑1

                                                                   CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACA                                                                                                       >  3:111288/1‑113

                                                                     GAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTT                                                                           >  2:320271/1‑139

                                                                          TATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  6:273558/139‑1

                                                                           ttgtAAACACGCCAGCAACGCGGCCTTTTTTCGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  1:231113/134‑1

                                                                            tgcAAAAACGCCCGCACCGCGGCCTTGTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCGCACAGGGGCGGCGGGGCGTGGCGGCGTATTGTATGGCTATGCCACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  6:185542/134‑1

                                                                            gGGAAAACCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTAGCTGGCCTTTTGCTCACATGTGCGGCGGGGCGTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  2:84737/136‑1

                                                                            TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  3:147467/137‑1

                                                                            TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  2:42469/1‑92

                                                                                AAAACGCCAGAAACGCGGACTTTTTACGGTTCCTCGCCTTTTCCTGCCCTTTTGCTCACAAGTGCGGCGGGCATTGGCCTCTTATTGTATGGCTAAGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCAGAAAGATT                                                                >  1:42799/1‑139

                                                                                  AACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTA                                                                                                                  >  7:132066/1‑87

                                                                                  AACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   <  7:96557/86‑1

                                                                                  AACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  2:119190/1‑86

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  1:101122/139‑1

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  7:59907/139‑1

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  4:144976/139‑1

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  3:49220/139‑1

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  3:287304/139‑1

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTG                                                                                                                               >  1:122636/1‑72

                                                                                    CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCGGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  5:193206/139‑1

                                                                                     GCCAGCAACGCTGCCTTTTTACGGTGCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGTCTATGACACGGCATTGATTTCTGGCGCCTTCGGTTTTATGAAAGATTTATAC                                                           <  7:161084/139‑1

                                                                                      CCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      >  4:45913/1‑127

                                                                                             CGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAG                                                   <  8:121243/139‑1

                                                                                             CGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAG                                                   <  2:237839/139‑1

                                                                                              caGGCCTGTTTACGGGTCCTGGCCTTGTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCGTGGCGGATTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCTTCGGTTTTCTGAAAGATTTATACAGCCTGAGT                                                  <  3:243237/137‑1

                                                                                              GCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCTCTTGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACAGGGCAGTGATTTCTGGCGGCATCGGTTATCTGAATGATTTATTCAGCCTGAGT                                                  <  5:165757/139‑1

                                                                                               CGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            >  6:249911/1‑128

                                                                                                 GCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  2:262601/126‑1

                                                                                                   CTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTT                                             <  4:121881/139‑1

                                                                                                          CGGTTCCTGGCCTTTTGCTGGCCATTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGA                                       <  6:86153/138‑1

                                                                                                              TCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  4:254911/113‑1

                                                                                                                   GCCTGTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTG                               <  1:276394/137‑1

                                                                                                                      TTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGAGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCCTGTATGGAGGGACTTGTCATg                          >  5:247945/1‑138

                                                                                                                       TTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTTTACAGCATTAGTCGGTTTATGGAGGGACTTGTCATTT                         >  7:295626/1‑139

                                                                                                                         TGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTC                        <  5:61793/138‑1

                                                                                                                              GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCAT                  <  8:177398/139‑1

                                                                                                                              GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCAT                  >  1:296358/1‑139

                                                                                                                              GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGC                                                        >  2:148871/1‑101

                                                                                                                              GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGC                                                                                      <  7:267967/71‑1

                                                                                                                               CCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTTATTTCAAGCATT                 <  6:299580/139‑1

                                                                                                                                   TTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTCTGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTAT               <  8:36943/137‑1

                                                                                                                                   TTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTAT               <  6:108535/137‑1

                                                                                                                                        agagacTGCGGCGGGGCTTGGCGGCTTATTGTATTGCTATGACACGGCAGTGATTTCTTGAGCGATCGGTTTTCTGAAAGATTTTTTCAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCTATCATTATGATTGGA        <  6:324244/133‑1

                                                                                                                                        CACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTG          >  3:223636/1‑137

                                                                                                                                         ACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTTAGTACGTTTTTGGAGTGACTTGTCATTTCAAGCATTATGATTGG         <  4:332893/137‑1

                                                                                                                                         ACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTAGGATTGGAG       <  1:6630/139‑1

                                                                                                                                         ACAGGTGAGGCGGGGCTTGGGGGCTTATTGTATGGCTATGTCACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGGATTATGATTGGAG       <  6:63181/139‑1

                                                                                                                                           ATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGA     >  1:92454/1‑139

                                                                                                                                           ATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACA                                                                                                       <  1:32220/41‑1

                                                                                                                                             GTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGAGT   >  5:216913/1‑139

TTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/5409‑5551

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGAGTT  >  pSIJ663_pHT315_araE_xy/9889‑10026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.