New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	2228866 =	54 (0.690)	39 (0.510)	21/244	1.7	59.2%	intergenic (‑118/‑88)	U712_11195/U712_11200	Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase
	?	CP006881	3304616 =	1 (0.010)					intergenic (+4/+45)	U712_16995/U712_17000	Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT

AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/2229006‑2228866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC  >  CP006881/3304616‑3304750                                                                                                                                                                                                                                                                                      AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA                                                                                                                                           <  6:337817/139‑1  GTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAA                                                                                                                                          <  6:23761/139‑1   TGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA                                                                                                                                           >  5:190466/1‑137   TGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTATCAAAAGAGTGTCAACGTGTATTGACGCAGTA                                                                                                                                           >  6:241234/1‑137         TAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA                                                                                                                                           >  7:123909/1‑131         TAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA                                                                                                                                           <  8:123909/131‑1                                                    ATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAA                                                                                                                                          <  7:167155/89‑1                                                    ATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAA                                                                                                                                          >  8:167155/1‑89                                                                                    tgtcaCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAA                                                        <  6:307091/134‑1                                                                                      tcaCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACG                                                      <  1:193324/136‑1                                                                                        aCTGTTAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA                                                    <  6:369550/138‑1                                                                                        aCTGATAATTTAAGACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA                                                    <  1:303916/138‑1                                                                                        aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA                                                    <  4:190232/138‑1                                                                                        aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA                                                    <  8:156356/138‑1                                                                                        aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA                                                    >  1:348694/2‑139                                                                                        aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTAT                                                                                                 <  5:185472/93‑1                                                                                        aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTAT                                                                                                 >  6:185472/2‑94                                                                                                TTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAT                                                                 >  7:186735/1‑118                                                                                                TTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAT                                                                 <  8:186735/118‑1                                                                                                          ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGT                                  >  8:84381/3‑139                                                                                                          ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTA                                                                                                  <  7:19324/73‑1                                                                                                          ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTA                                                                                                  >  8:19324/3‑75                                                                                                                  GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGT                          >  1:278819/1‑139                                                                                                                  GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGT                          >  3:86866/1‑139                                                                                                                  GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAA                                                        <  6:351290/109‑1                                                                                                                  GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAA                                                        >  5:351290/1‑109                                                                                                                   AGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTT                         >  4:91372/1‑139                                                                                                                    GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCTTGTTCAAAGGTTT                        >  4:105720/1‑139                                                                                                                    GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTT                        <  3:85705/139‑1                                                                                                                    GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTT                         >  8:210305/1‑138                                                                                                                    GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA                                                >  6:46003/1‑115                                                                                                                    GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA                                                <  5:46003/115‑1                                                                                                                             TGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTGCTGAGTTAA               <  7:202990/139‑1                                                                                                                               TATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAC              >  8:271749/1‑138                                                                                                                                    ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAA         <  5:310093/138‑1                                                                                                                                    ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAA         <  7:8673/138‑1                                                                                                                                    ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAA         <  4:328990/138‑1                                                                                                                                       CAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTC     >  6:356792/1‑139                                                                                                                                        AGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCG    >  7:119026/1‑139                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT   >  6:56509/1‑139                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT   >  3:349102/1‑139                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT   >  2:172434/1‑139                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCG    >  6:217148/1‑138                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGC                                      >  8:361321/1‑104                                                                                                                                         GTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGC                                      <  7:361321/104‑1                                                                                                                                          TAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC  <  6:352773/139‑1                                                                                                                                          TAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTGTCTGAGTTAACCATAATTTCGT   >  8:156380/1‑138                                                                                                                                                                                                                                                                                      AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/2229006‑2228866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC  >  CP006881/3304616‑3304750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.